Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22e20
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 48 1e-06
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 34 0.024
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 30 0.39
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 29 0.68
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 29 0.90
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.90
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 28 1.2
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 28 1.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 28 1.6
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 28 1.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 2.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.6
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 3.6
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 27 3.6
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 3.6
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 26 4.8
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 4.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 6.4
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 26 6.4
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.4
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 48.4 bits (110), Expect = 1e-06
Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 4/184 (2%)
Frame = +2
Query: 191 EDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNA 370
ED SS + SE+ +++ + +S+ S +EG +S ++ ES +S++ ++
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDN-DS 236
Query: 371 VELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQ--SDSASHKAV 544
S+ S + + S+ S +++ + S NS+ +ED+S SDS S +
Sbjct: 237 SSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
Query: 545 LDTDSRQ--SESQHATDSNVGEINENSGNDSNFATEHVNLNVDKSEQLEIVEPCSSPVKD 718
D+DS S+S ++ S G N ++ + + + E + + SS + D
Sbjct: 297 EDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHD 356
Query: 719 PVIK 730
+K
Sbjct: 357 KSLK 360
Score = 40.3 bits (90), Expect = 3e-04
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Frame = +2
Query: 191 EDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNA 370
E E+SS+ S + ++ +N + S +E E +S D+ D SS+S+
Sbjct: 154 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDS--DSSSSSSDS---- 207
Query: 371 VELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDN---SIQSDSASHKA 541
E + S G ++ ++S +++ + +DS + + +ED+ S SDS S +
Sbjct: 208 -ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 266
Query: 542 VLDTD----SRQSESQHATDSNVGEINENSGNDSN 634
D+D S SE ++DS+ E +E+S DS+
Sbjct: 267 SKDSDSSSNSSDSEDDSSSDSSDSE-SESSSEDSD 300
Score = 38.7 bits (86), Expect = 8e-04
Identities = 30/162 (18%), Positives = 77/162 (47%)
Frame = +2
Query: 194 DETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAV 373
DE+ S + + + D D +++ + S ++ +S D+ + SS + ++
Sbjct: 110 DESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS 169
Query: 374 ELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDT 553
+ S+ + +N+ S+DS + + + S + + +E +S SDS+S + ++
Sbjct: 170 SSESESSSE--DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES 227
Query: 554 DSRQSESQHATDSNVGEINENSGNDSNFATEHVNLNVDKSEQ 679
+S ++ ++ S+ E +E+S DS+ ++ + + S +
Sbjct: 228 ESSSEDNDSSSSSSDSE-SESSSEDSDSSSSSSDSESESSSK 268
Score = 28.7 bits (61), Expect = 0.90
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 473 NDSLNSALTEDN---SIQSDSASHKAVLDTDSRQSESQHATDSNVGEINENSGNDSNFAT 643
+ S + + +EDN S SDS S + D+DS S S ++S+ E +++S + S+ +
Sbjct: 115 SSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS-SEGSDSSSSSSSSES 173
Query: 644 EHVNLNVDKSEQLEIVEPCSS 706
E + + D S E SS
Sbjct: 174 ESSSEDNDSSSSSSDSESESS 194
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 33.9 bits (74), Expect = 0.024
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +2
Query: 269 NSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENNGPRFSTDSFDI 448
NSN H ++ + ++ A + FL +E S ++ N P DS +
Sbjct: 77 NSNNEKHENSDKKIHTTVLASGHEDSDYSTFLPVIETSKVKDANHFPPNYPEPKNDS--V 134
Query: 449 GDNAVTFPNDSLNSA 493
N FPNDS++SA
Sbjct: 135 SSNIDEFPNDSISSA 149
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 29.9 bits (64), Expect = 0.39
Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Frame = +2
Query: 224 SENPMDTDEGPLINENSNGLSHLLTEGEF-NSVDAAVDESSTSNQCFLNAVELSAGSA-- 394
+ + M T E LI+ L L+ EF N+ ++ + S NQ ++ ++ + S
Sbjct: 564 ARSSMQTIES-LIHPRFPPLQKHLSPSEFENTFESRFEPVSLENQSHISPPQVDSQSEYK 622
Query: 395 -GDYLENNGPRFSTDSFDIGDNAVTFPND--SLNSALTEDNSIQSDSASHKAVLDTDSRQ 565
L + P F T+S S ++ L +++ S++ ++ L T S
Sbjct: 623 ESSILAPSNPPFETESITDSTEIEGIKESFASTDTGLQNNSTATSENKRSESEL-TMSNV 681
Query: 566 SESQHATDSNVGEINENSGNDSNFATEHVNLNVDKSE 676
++ + EIN + + N T+H+N+ + E
Sbjct: 682 LSNEGDRNEEGSEINSSQPSTINHGTDHINIVSENKE 718
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 29.1 bits (62), Expect = 0.68
Identities = 20/90 (22%), Positives = 38/90 (42%)
Frame = +2
Query: 404 LENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHA 583
+ N P F+ + ++ N FPND + D +SAS++ + + +
Sbjct: 311 ISNQSPVFTLTTMELTRN---FPNDIDVESSIVDKQYSVNSASNELRVMEKLNELDELAE 367
Query: 584 TDSNVGEINENSGNDSNFATEHVNLNVDKS 673
D+ ++EN+ S +H+ L D S
Sbjct: 368 EDNYEESVDENANRKSKVLAQHLELLADCS 397
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 28.7 bits (61), Expect = 0.90
Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Frame = +2
Query: 239 DTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAG--DYLEN 412
D P EN + + + N ++++++SN + L + + D +++
Sbjct: 269 DNIREPQEEENDVDVDEIFNRQQLNQPALDLNDANSSNSVPVEFNSLHSQNVDYRDEVDS 328
Query: 413 NGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSD--SASHKAVL-DTDSRQSESQHA 583
P+F+ D ++ + ++ A+T+ N I+SD H+ ++ + D ++
Sbjct: 329 LRPQFNVDEQSSISHSSNASENIVDGAVTQANGIESDFTRVDHEPIIVNNDDENGNNESE 388
Query: 584 TDSNVGEINEN 616
+ + E N N
Sbjct: 389 NEEVIEEDNLN 399
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.90
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = +2
Query: 317 VDAAVDES-STSNQCFLNAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPN----DS 481
V+ A D + +T+ F V GS G N R D + N+ F D+
Sbjct: 244 VEYAEDSAYNTNTSLFYGVVGHQNGSNGFISPKNLTR---DLLNYKANSTLFGGVTIWDT 300
Query: 482 LNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNVG 601
+A++ DNS ++ + +LDT S+ S S+ + DS+ G
Sbjct: 301 SLAAMSYDNSSETFVEAIHKILDTKSKHSSSKSSHDSSQG 340
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 410 NNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAV 544
N P S DSF G + P S S++ +NS+Q A H V
Sbjct: 255 NASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQPVAYHAFV 299
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +2
Query: 419 PRFSTDSFDIGDNAVTFPNDSLNSALT---EDNSIQSDSASHKAVLDTDSRQSESQHATD 589
P T SF + + ++ + + S LT +D S+ + +AV D + + A
Sbjct: 521 PVAGTFSFQLHIMSNSYVGEDVISNLTMIVKDTSVLQEQLQEEAVSDLEDNSDIDESANA 580
Query: 590 SNVGEINENSGNDSNFATEHVNLNVDKSE 676
+EN G+D +E+ ++ D S+
Sbjct: 581 GKDFSDDENIGSDEEDESEYDPMDTDTSD 609
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 1.6
Identities = 29/157 (18%), Positives = 60/157 (38%)
Frame = +2
Query: 248 EGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENNGPRF 427
+G ++NEN +G + ++ D+S +++ +S A D + +
Sbjct: 1846 QGDIVNENDENYEDSEDDGVYEEMEFEDDQSGSADSV------VSEDDADDVMYS----- 1894
Query: 428 STDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNVGEI 607
D D + F D +++ D+S +++SH V+ D ++Q E
Sbjct: 1895 -----DNDDMNIEFMVDEQDASSQNDDSSFDEASSHGDVISIDEEDLDNQGEEFEWEDED 1949
Query: 608 NENSGNDSNFATEHVNLNVDKSEQLEIVEPCSSPVKD 718
N +SG + + + S E +E + D
Sbjct: 1950 NASSGYEDELDYNEDEVGENDSTTFEAMENAFTETSD 1986
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +2
Query: 371 VELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAV 544
+ L + SA D L+N+GP +T S ++ T+P DSLN+ +S +SAS A+
Sbjct: 157 LSLRSASALDVLKNSGP--ATTSLL---SSTTYPFDSLNAFNEPSHSHVPNSASSTAL 209
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 521 DSASHKAVLDTDSRQSESQHATDSNVGEINENSGNDS 631
D+ +K L+ + Q + HAT SN G + +SG D+
Sbjct: 474 DTRMYKVCLNFTTTQKDINHATISNSGILVTSSGTDN 510
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 200 TSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESST 346
+SS++ + P D D +N+NS+ L + + +D SS+
Sbjct: 46 SSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEIDSSSS 94
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +2
Query: 374 ELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDT 553
+ S G G N P S+D + P S +S+LT++ + S+ D+
Sbjct: 287 DFSKGDRGLSFVNLSPNIKATSYDRLSTVINEPFISRSSSLTDERGLADSGNSYHHFSDS 346
Query: 554 D 556
D
Sbjct: 347 D 347
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 27.1 bits (57), Expect = 2.8
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Frame = +2
Query: 164 LPDF*T*NMEDETSSDNQKGSENPMDTDEGPLINENS--NGLSHLLTEGEFN--SVDAAV 331
+PD D S + + N +TDE +NE S +S + T G+ N S + V
Sbjct: 92 IPDMQDEYSRDSHSQQSVEEQNNTTNTDEDASVNEFSVAADISDVNTLGKDNSESTEEPV 151
Query: 332 DESSTSNQCFLNAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSA--LTED 505
+E + + V +G + L+N P D + G+ A D + S E
Sbjct: 152 NEVNETATLGNEDVGERSGFPSEGLDNE-PESQRDLDETGNLAPEDLKDEVKSVHEFNEP 210
Query: 506 NSIQSDSASHKAVLDTDSRQSE 571
N ++ S+ DT+ + E
Sbjct: 211 NDLRQQEESYSDDDDTNVNEFE 232
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 3.6
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
Frame = +2
Query: 281 LSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENN-GPRFSTDSFDIGDN 457
+ H G + + D SSTSN+ AG+ Y + N DSF
Sbjct: 931 VQHFSRYGLLDDEEEENDMSSTSNE---------AGNLKKYDQPNLKVSGKNDSFVTHHT 981
Query: 458 AVTFPNDSLNSALTEDNSIQSDSASHKAVLDT-DSRQSESQHATDSNVGEINENSGN 625
FPNDS N L DSA + DT S++ + ++DSNV E + N
Sbjct: 982 PGAFPNDSKNKELNRHFLKVDDSA---PLDDTFMSKKVKLDFSSDSNVSERGDYDDN 1035
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.6
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +2
Query: 422 RFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQ---HATDS 592
+ ++ DI N DS+N T +N + AS +A D + QS Q T S
Sbjct: 10 QLQNEAVDINSNDTI---DSINWKNTRNN--HTTQASLQA--DNNDEQSNGQAPFSTTYS 62
Query: 593 NVGEINENSGNDSNFATEHVNLNVDKSEQLEIVE 694
+ I++ GN +++ + + +SE E+VE
Sbjct: 63 EINNIHDVPGNQDEWSSSPIAGIIVESEDEEVVE 96
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 482 LNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSN 595
L+ LT+D + S K V TD+ S + H T N
Sbjct: 336 LSPCLTDDEQLSKSLTSFKQVNVTDASLSPNSHNTSDN 373
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 497 TEDNSIQSDSASHKAVLDTDSRQSESQHATDSNV 598
TED++ +D ++ + + S SES+HA D+ V
Sbjct: 55 TEDDADDADDVNNYIMSPSSSLSSESEHALDALV 88
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 377 LSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQS 520
L +GSA + L + F +D+GD N ++ SA+ ++ SI S
Sbjct: 637 LFSGSAQELLSSIIFVFVKHPYDVGDRVDVMINGTVTSAMVKEISIMS 684
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 260 SKDLRLYPWDFQILSDYRSLFHLPC 186
SK+L W F++L +L+ LPC
Sbjct: 18 SKNLNKLRWKFRLLESQFALYSLPC 42
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 365 NAVELSAGSAGDY-LENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKA 541
N+ E + + +Y + +++ + D+ +D +N+ +D+ S S S++
Sbjct: 187 NSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESYER 246
Query: 542 VLDTDSRQSESQHATDSNVGEINENSGND 628
D D + E + + +EN ++
Sbjct: 247 DEDVDEEEEEDDDENNDEGDDEDENENDE 275
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -3
Query: 351 LDVDDSSTAASTLLNSPSV---NK*ESPLEFSFIKGPS 247
LD + T AS LL + N E+PL+FS+ KG S
Sbjct: 269 LDWSEMETVASDLLIHSYIAYENNSETPLKFSYAKGVS 306
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 482 LNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNVGE 604
LN L +N +Q+D+ +D D +++ + VGE
Sbjct: 344 LNPILRSENVLQNDNHHSSLSMDNDPTNVSTKNRNNQTVGE 384
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 290 NEKVRWSSHLSKDLRLYPWDFQILSDYRSLFHLPCFKFRNL 168
N KV S L + YPW ++L + FHL F+ L
Sbjct: 486 NHKVLMPS-LDDPMLSYPWSKEVLGCLKHKFHLKGFRKNQL 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,220
Number of Sequences: 5004
Number of extensions: 58569
Number of successful extensions: 250
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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