Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22e20
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 32 0.41
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 32 0.54
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 30 2.2
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 29 2.9
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 29 2.9
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502... 29 3.8
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 29 5.0
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 29 5.0
02_02_0741 + 13590883-13591582,13591955-13592250 29 5.0
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 6.6
06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645... 28 6.6
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 28 6.6
04_04_0339 - 24513699-24516827 28 6.6
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 6.6
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 8.8
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +2
Query: 398 DYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQ 577
D + + F+T+ + DNAV D L +D+ I+ + H ++QS S+
Sbjct: 196 DLISSGDDAFNTEEHHLEDNAVLRGGDDL-----DDDFIEEEETRHTKA--KKAKQSSSK 248
Query: 578 HATDSNVGEINENSGNDSNFAT 643
T++ G+ N N+ +N A+
Sbjct: 249 STTETGDGDKNTNTKAKANSAS 270
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 31.9 bits (69), Expect = 0.54
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +2
Query: 188 MEDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDE-SSTSNQCFL 364
++DE D+ K S +D+ + +N NG S L + +S +A+DE SN
Sbjct: 636 VKDEEVIDSSKNSGENLDSS----MQKNDNGESQQLGDAPADSSSSAIDEIKGNSNDRVG 691
Query: 365 NAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDN 508
N +E GS +Y E G ++ I ++ +D L T D+
Sbjct: 692 NGLE---GSHDEYNEVAGEDIHGEASLINESVDLKVSDCLEDRKTSDD 736
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +2
Query: 473 NDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNVGEINENSGNDSNFATEHV 652
N S+N ++E + + S K ++T + + S D N+ + N +G SN +
Sbjct: 471 NLSVNKMISEKITCMNGSIK-KDTVETKTLRVPSLVKEDVNLKKQNSENGQSSNISNAPQ 529
Query: 653 NLNVDKSEQLEIVEPCSSPVKDP 721
+ E++E +SP DP
Sbjct: 530 DQCSKSHSNTEVLEAAASPNNDP 552
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +2
Query: 500 EDNSIQSD-SASHKAVLDTDSRQSESQHATDSNVGEINENSGNDSNFATEHVNLNVDKSE 676
E S SD A A DT+ S + D + G + +D N E + +K E
Sbjct: 654 EGKSDASDPDAGFDAENDTELSTSSQEQEEDEDDGPEEQKDNSDDNKMDEDHVMVENKEE 713
Query: 677 QLEIVEPCSSPVKDPVIK 730
Q E +P P + PV K
Sbjct: 714 QEEQPQPPPLPPQQPVEK 731
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 29.5 bits (63), Expect = 2.9
Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 3/169 (1%)
Frame = +2
Query: 185 NMEDETSSDNQKGSENPMDTDEGPLINENSNGLSH--LLTEGEFNSVDAAVDESSTSNQC 358
NM E SSD + + DE PL+ + L N+ + DE +++
Sbjct: 385 NMATEESSDTVSEEKEAVPADEVPLVTVTCGEATRDAELPTNIGNAKEEDDDEMEAAHEA 444
Query: 359 FLNAVELSAGSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHK 538
AVE+ D L + ++ + +A D D+ QS +
Sbjct: 445 GF-AVEVDGSETVDELIGTLTEHADNAIQLNFSAELSCADEEAGVFATDDLQQSSATVKT 503
Query: 539 AVLDTDSRQSESQHATDSNVG-EINENSGNDSNFATEHVNLNVDKSEQL 682
V D+++ + E ++ VG + E + E ++ + D + QL
Sbjct: 504 MVADSEANEEEDALEAENEVGFAVEEKEVRTGDEPHETLSNDADGAIQL 552
>11_04_0160 +
14247463-14247584,14247710-14247923,14250099-14250215,
14251578-14251670,14251748-14251922,14252981-14253017,
14253842-14253875,14254212-14254481,14255768-14255872,
14256295-14256392,14256474-14256616,14257197-14257290,
14257378-14257487,14258018-14258172,14258252-14258332,
14258415-14258535,14259358-14259464,14259537-14259668,
14261105-14261258,14264094-14264211,14264344-14264517,
14264831-14264882,14265450-14265577,14265670-14265820,
14265904-14266242
Length = 1107
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 263 NENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDYLENNGPR 424
NE G+S + E + S+DA +D+ + + F AV + GSAG+ ++ R
Sbjct: 300 NETKLGMSRGVPEPKLTSMDAMIDKLTGAIFLFQIAVVVVLGSAGNVWKDTEAR 353
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 28.7 bits (61), Expect = 5.0
Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Frame = +2
Query: 224 SENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAAVDESSTSNQCFLNAVELSAGSAGDY 403
S++ D D P + + + + GE D+SS+ + + G
Sbjct: 416 SDDSADNDYDPTLAQGHK-VDEEKSSGEDGGEGLDSDDSSSEDSESSEKEKSKTSQNGRT 474
Query: 404 LENNG-PRFSTDSFDI---GDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSE 571
+++ G P ++ D G ++ ND NS ++++ SDS A + Q E
Sbjct: 475 VDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDDFCAEIAKSCGQDE 534
Query: 572 SQHATDSNVGEIN--ENSGNDSNFATEHVNLNVDKSE-QLEIVEPCSS 706
+ S + ++ + SG D E+ NL ++E + ++V P SS
Sbjct: 535 ISGPSSSQIRTVDRTDGSGFDGEPNAENSNLAFMETELEQDMVLPISS 582
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 367 VQETLIRCRRLINSSIDTIKFALC*QMRKSVGVLIYQ 257
V+E +R R +NSS I FALC R S + IY+
Sbjct: 449 VEEQQVRSRYGLNSSEPNILFALCCGNRSSPALRIYK 485
>02_02_0741 + 13590883-13591582,13591955-13592250
Length = 331
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Frame = +2
Query: 185 NMEDETSSDNQKGSENPMDTDEGPLINENSNGLSHLLTEGEFNSVDAA-VDESSTSNQCF 361
N S+D + G+ P +I + NG + ++ EF DAA + + F
Sbjct: 126 NQAPSQSTDKKDGTLQPNSGANRTVIWKMDNGRTMIIAGSEFTPEDAARIPKRQRGRNTF 185
Query: 362 LNAVELSA-----GSAGDYLENNGPRFSTDSFDIGDN 457
A +L+ G + +G RFS D D D+
Sbjct: 186 RGARQLTRHLIKYGPPRPKDDESGERFSADDDDDNDD 222
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/96 (27%), Positives = 40/96 (41%)
Frame = +2
Query: 386 GSAGDYLENNGPRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQ 565
GS G + + + +D D G T PN NS + E NS++ +S + V+
Sbjct: 577 GSGGGRKKGDSGKDDSDG-DSGKEH-TLPNG--NSKMQE-NSLKDNSHARSVVVKGKENG 631
Query: 566 SESQHATDSNVGEINENSGNDSNFATEHVNLNVDKS 673
+ A D N + N GN N +V N K+
Sbjct: 632 DPNDGAFDVNKLQKMRNKGNKKNEVASNVAKNTSKA 667
>06_01_0847 -
6451525-6451678,6452870-6453066,6454300-6454591,
6454622-6454654,6454869-6455102,6455204-6455259,
6455552-6456754
Length = 722
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +2
Query: 476 DSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHATDSNVGEINENSGNDSNFATEHVN 655
D N A+TE ++ + + +L R++E +A ++ + NENSGNDS A HV
Sbjct: 7 DEKNVAVTEGSTNSEEKDQDEDLL----RRTEMLNAKEA-INSSNENSGNDSE-AQIHVR 60
Query: 656 LNVDKSEQLEIVEPCSSPVKDP 721
+ K ++ + SS +P
Sbjct: 61 DDSQKEFNEKMNKEGSSDPMEP 82
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 470 PNDSLNSALTEDNSIQSDS--ASHKAVLDTDSRQSESQHATDSNVGEINENSGNDS 631
P+D + + L S + D+ + K V+D DS E DSN+ + G S
Sbjct: 156 PDDVVATGLKSSRSFRKDAPHVTEKRVMDNDSSTPEKDTTADSNLPVKSNEFGESS 211
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 503 LQSMRYLE-NHWEKLQHYHQCQKNLY*SEGRCFRGSHQRFQLIIPRRSRNI 354
+Q+++ L+ +H EKL H H+ NL + G H + I+PR +N+
Sbjct: 630 MQALQVLDLSHCEKLLHLHESVSNLVNLQILNLEGCH--YLAILPRSMKNL 678
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 419 PRFSTDSFDIGDNAVTFPNDSLNSALTEDNSIQSDSASHKAVLDTDSRQSESQHAT 586
PR + + D T P ++ A D S S +A D SRQ ++ H T
Sbjct: 1774 PRPNAEKLDDRSGDGTVPQRGVHLAFQGDGDYDSQFKSEQAFADPASRQQDTVHRT 1829
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 191 EDETSSDNQKGSENPMDTDEGPLINENSN-GLSHLLTEGEFNSVDAAVDESSTSNQ 355
E+ET DN+K E M TDE E + L E E + ++E N+
Sbjct: 227 EEETKKDNEKEKEQLMGTDEKEKEKEKEDENEEEKLEEEEKKDKEEKLEEKEKENE 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,629
Number of Sequences: 37544
Number of extensions: 327076
Number of successful extensions: 985
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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