Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22e20
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.18 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 607 YLSYIGICCMLTFRLPTVCV*NCFVGCRVTLNRIIFSQCAI 485
           Y SYIG+  ++   +PT     C++G    +  I  SQC I
Sbjct: 640 YYSYIGVLTLVATSMPTYI---CYLGKAYLMYAIAGSQCFI 677


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 542 VLDTDSRQSESQHATDSNVGEINENSGNDSNF 637
           ++  ++    S    +SN G INE+  ND N+
Sbjct: 34  IIQNNNNDDWSVGKKNSNSGTINESEFNDENY 65


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = +2

Query: 539 AVLDTDSRQSESQHATDSNVGEINENSGNDSNFATEHVNLNVDKSEQLEIVEPCSSPVKD 718
           +++D  S  S    +      + +++   + +    H N + +K  QLEI    S  V D
Sbjct: 31  SIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVND 90


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 476 DSLNSALTEDNSIQSDSAS 532
           DS NSA T ++ + SDSAS
Sbjct: 82  DSQNSASTYNSFLSSDSAS 100


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 629 SHCQSFHLSLLHWNLLHVDFQTAYCLCLKLLCGMQSH 519
           SH +S H ++  +   +  + T YC  LKL     SH
Sbjct: 34  SHLKS-HSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 494 MRYLENHWEKLQHYHQCQK 438
           M  L+NHW    +  QC++
Sbjct: 792 MESLDNHWILRSNVQQCEQ 810


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,739
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)