Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22e16
(724 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35402-1|CAA84586.1| 827|Homo sapiens E-cadherin protein. 31 3.2
Z18923-1|CAA79356.1| 882|Homo sapiens E-cadherin protein. 31 3.2
Z13009-1|CAA78353.1| 882|Homo sapiens E-cadherin protein. 31 3.2
L08599-1|AAA61259.1| 878|Homo sapiens uvomorulin protein. 31 3.2
DQ090940-1|AAY68225.1| 882|Homo sapiens cadherin 1, type 1, E-c... 31 3.2
AK131255-1|BAD18434.1| 957|Homo sapiens protein ( Homo sapiens ... 31 3.2
AB025106-1|BAA88957.1| 901|Homo sapiens E-cadherin protein. 31 3.2
AB025105-1|BAA88956.1| 821|Homo sapiens E-cadherin protein. 31 3.2
BC016029-1|AAH16029.1| 639|Homo sapiens CTTNBP2 N-terminal like... 31 5.5
AL591375-2|CAI12099.1| 1652|Homo sapiens NHS-like 1 protein. 31 5.5
AL391669-2|CAI14157.1| 1652|Homo sapiens NHS-like 1 protein. 31 5.5
AL354760-2|CAI22308.1| 639|Homo sapiens novel protein protein. 31 5.5
AB037854-1|BAA92671.1| 652|Homo sapiens KIAA1433 protein protein. 31 5.5
U17690-2|AAB48379.1| 840|Homo sapiens neurofibromatosis 1 protein. 30 9.6
U17690-1|AAB48380.1| 861|Homo sapiens neurofibromatosis 1 protein. 30 9.6
M89914-1|AAA59925.1| 2839|Homo sapiens neurofibromin protein. 30 9.6
M82814-1|AAA59924.1| 2818|Homo sapiens GAP-related protein protein. 30 9.6
M61213-1|AAA59923.1| 482|Homo sapiens neurofibromatosis protein... 30 9.6
M60915-2|AAA59922.1| 378|Homo sapiens neurofibromatosis protein... 30 9.6
M60915-1|AAA59921.1| 399|Homo sapiens neurofibromatosis protein... 30 9.6
M38107-1|AAB59558.1| 2503|Homo sapiens neurofibromatosis protein... 30 9.6
M38106-1|AAA74897.1| 2485|Homo sapiens neurofibromatosis type 1 ... 30 9.6
AY796305-1|AAV50004.1| 2818|Homo sapiens neurofibromin 1 (neurof... 30 9.6
AL357117-2|CAI14133.1| 634|Homo sapiens phosphatase and actin r... 30 9.6
AL078593-4|CAI19814.1| 634|Homo sapiens phosphatase and actin r... 30 9.6
AL049844-4|CAI21446.1| 634|Homo sapiens phosphatase and actin r... 30 9.6
AB209336-1|BAD92573.1| 968|Homo sapiens neurofibromin variant p... 30 9.6
AB014580-1|BAA31655.2| 635|Homo sapiens KIAA0680 protein protein. 30 9.6
>Z35402-1|CAA84586.1| 827|Homo sapiens E-cadherin protein.
Length = 827
Score = 31.5 bits (68), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 302 DDVVNRADANISTAFSDPL--PGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDY 466
D++ N D N+ A +DP P S + YE S S+ + +++E DQD DY
Sbjct: 750 DEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDY 806
>Z18923-1|CAA79356.1| 882|Homo sapiens E-cadherin protein.
Length = 882
Score = 31.5 bits (68), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 302 DDVVNRADANISTAFSDPL--PGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDY 466
D++ N D N+ A +DP P S + YE S S+ + +++E DQD DY
Sbjct: 805 DEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDY 861
>Z13009-1|CAA78353.1| 882|Homo sapiens E-cadherin protein.
Length = 882
Score = 31.5 bits (68), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 302 DDVVNRADANISTAFSDPL--PGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDY 466
D++ N D N+ A +DP P S + YE S S+ + +++E DQD DY
Sbjct: 805 DEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDY 861
>L08599-1|AAA61259.1| 878|Homo sapiens uvomorulin protein.
Length = 878
Score = 31.5 bits (68), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 302 DDVVNRADANISTAFSDPL--PGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDY 466
D++ N D N+ A +DP P S + YE S S+ + +++E DQD DY
Sbjct: 801 DEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDY 857
>DQ090940-1|AAY68225.1| 882|Homo sapiens cadherin 1, type 1,
E-cadherin (epithelial) protein.
Length = 882
Score = 31.5 bits (68), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 302 DDVVNRADANISTAFSDPL--PGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDY 466
D++ N D N+ A +DP P S + YE S S+ + +++E DQD DY
Sbjct: 805 DEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDY 861
>AK131255-1|BAD18434.1| 957|Homo sapiens protein ( Homo sapiens cDNA
FLJ16186 fis, clone BRTHA2007060, moderately similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 10. ).
Length = 957
Score = 31.5 bits (68), Expect = 3.2
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Frame = +2
Query: 131 LNKAEECYVKID--RLFKESIKKIMDDTEAFEKEQEAERL--RAEQTAANALLNRRAQTS 298
L +AEE + D R KE +++ E EK+++ ER E+ ALL R A
Sbjct: 807 LREAEEARKREDAERKKKEEEERLRKLEEIAEKQRQRERELEEKEKQRREALLGRAAAEP 866
Query: 299 AD-----DVVNRADANISTAFSDPLPGSSAPRYMYESSES 403
A + + A A + A + P PG P++ E +ES
Sbjct: 867 APPARPLESGSAAPAAAAAAAAAPTPGKYVPKFRRERTES 906
>AB025106-1|BAA88957.1| 901|Homo sapiens E-cadherin protein.
Length = 901
Score = 31.5 bits (68), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 302 DDVVNRADANISTAFSDPL--PGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDY 466
D++ N D N+ A +DP P S + YE S S+ + +++E DQD DY
Sbjct: 824 DEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDY 880
>AB025105-1|BAA88956.1| 821|Homo sapiens E-cadherin protein.
Length = 821
Score = 31.5 bits (68), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 302 DDVVNRADANISTAFSDPL--PGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDY 466
D++ N D N+ A +DP P S + YE S S+ + +++E DQD DY
Sbjct: 744 DEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDY 800
>BC016029-1|AAH16029.1| 639|Homo sapiens CTTNBP2 N-terminal like
protein.
Length = 639
Score = 30.7 bits (66), Expect = 5.5
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Frame = +2
Query: 131 LNKAEECYVKIDRLFKESIKKIMDDTEAFEKEQEA-ERLRAEQTAANA-------LLNRR 286
LN+ EE K + ES+KKI+ D EA + E+L+ T + L++
Sbjct: 253 LNR-EENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQLKKPVTVSKGTATEPLMLMSVF 311
Query: 287 AQTSADDVVNRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYT 448
QT + +NI+ + LPG + P Y Y ++++ + +P T T
Sbjct: 312 CQTESFPAERTHGSNIAKMTNTGLPGPATPAYSY--AKTNGHCDPEIQTTRELT 363
>AL591375-2|CAI12099.1| 1652|Homo sapiens NHS-like 1 protein.
Length = 1652
Score = 30.7 bits (66), Expect = 5.5
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +2
Query: 173 FKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSD 352
F + DD + ++E + + + + RR +T A + +D N T ++
Sbjct: 140 FAANASPFCDDYQDEDEETDQKCSLSSSEEERFISIRRPKTPASS--DFSDLNTQTNWTK 197
Query: 353 PLPGSSAPRYMYESSES-DTYMEPARHTAEHYTDQDKDYNAAYTADEYNSLVR 508
LP + M + +++ + P TA D D ++ YT D Y++L R
Sbjct: 198 SLPLPTPEEKMRQQAQTVQADVVPINITASGTGQDDADGHSVYTPDHYSTLGR 250
>AL391669-2|CAI14157.1| 1652|Homo sapiens NHS-like 1 protein.
Length = 1652
Score = 30.7 bits (66), Expect = 5.5
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +2
Query: 173 FKESIKKIMDDTEAFEKEQEAERLRAEQTAANALLNRRAQTSADDVVNRADANISTAFSD 352
F + DD + ++E + + + + RR +T A + +D N T ++
Sbjct: 140 FAANASPFCDDYQDEDEETDQKCSLSSSEEERFISIRRPKTPASS--DFSDLNTQTNWTK 197
Query: 353 PLPGSSAPRYMYESSES-DTYMEPARHTAEHYTDQDKDYNAAYTADEYNSLVR 508
LP + M + +++ + P TA D D ++ YT D Y++L R
Sbjct: 198 SLPLPTPEEKMRQQAQTVQADVVPINITASGTGQDDADGHSVYTPDHYSTLGR 250
>AL354760-2|CAI22308.1| 639|Homo sapiens novel protein protein.
Length = 639
Score = 30.7 bits (66), Expect = 5.5
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Frame = +2
Query: 131 LNKAEECYVKIDRLFKESIKKIMDDTEAFEKEQEA-ERLRAEQTAANA-------LLNRR 286
LN+ EE K + ES+KKI+ D EA + E+L+ T + L++
Sbjct: 253 LNR-EENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQLKKPVTVSKGTATEPLMLMSVF 311
Query: 287 AQTSADDVVNRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYT 448
QT + +NI+ + LPG + P Y Y ++++ + +P T T
Sbjct: 312 CQTESFPAERTHGSNIAKMTNTGLPGPATPAYSY--AKTNGHCDPEIQTTRELT 363
>AB037854-1|BAA92671.1| 652|Homo sapiens KIAA1433 protein protein.
Length = 652
Score = 30.7 bits (66), Expect = 5.5
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Frame = +2
Query: 131 LNKAEECYVKIDRLFKESIKKIMDDTEAFEKEQEA-ERLRAEQTAANA-------LLNRR 286
LN+ EE K + ES+KKI+ D EA + E+L+ T + L++
Sbjct: 266 LNR-EENRTKTLKEEMESLKKIVKDLEASHQHSSPNEQLKKPVTVSKGTATEPLMLMSVF 324
Query: 287 AQTSADDVVNRADANISTAFSDPLPGSSAPRYMYESSESDTYMEPARHTAEHYT 448
QT + +NI+ + LPG + P Y Y ++++ + +P T T
Sbjct: 325 CQTESFPAERTHGSNIAKMTNTGLPGPATPAYSY--AKTNGHCDPEIQTTRELT 376
>U17690-2|AAB48379.1| 840|Homo sapiens neurofibromatosis 1 protein.
Length = 840
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 668 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 715
>U17690-1|AAB48380.1| 861|Homo sapiens neurofibromatosis 1 protein.
Length = 861
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 689 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 736
>M89914-1|AAA59925.1| 2839|Homo sapiens neurofibromin protein.
Length = 2839
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 1439 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 1486
>M82814-1|AAA59924.1| 2818|Homo sapiens GAP-related protein protein.
Length = 2818
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 1418 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 1465
>M61213-1|AAA59923.1| 482|Homo sapiens neurofibromatosis protein
type 1 protein.
Length = 482
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 323 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 370
>M60915-2|AAA59922.1| 378|Homo sapiens neurofibromatosis protein
type 1 protein.
Length = 378
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 251 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 298
>M60915-1|AAA59921.1| 399|Homo sapiens neurofibromatosis protein
type 1 protein.
Length = 399
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 272 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 319
>M38107-1|AAB59558.1| 2503|Homo sapiens neurofibromatosis protein type
1 protein.
Length = 2503
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 1084 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 1131
>M38106-1|AAA74897.1| 2485|Homo sapiens neurofibromatosis type 1
protein protein.
Length = 2485
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 1084 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 1131
>AY796305-1|AAV50004.1| 2818|Homo sapiens neurofibromin 1
(neurofibromatosis, von Recklinghausen disease, Watson
disease) protein.
Length = 2818
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 1418 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 1465
>AL357117-2|CAI14133.1| 634|Homo sapiens phosphatase and actin
regulator 2 protein.
Length = 634
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +2
Query: 311 VNRADANISTAFSD---PLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYT 481
VNR +A T + +P P M ESSES + E H D D D YT
Sbjct: 393 VNRENAKCFTTKEELGKTVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYT 452
Query: 482 ADE 490
DE
Sbjct: 453 DDE 455
>AL078593-4|CAI19814.1| 634|Homo sapiens phosphatase and actin
regulator 2 protein.
Length = 634
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +2
Query: 311 VNRADANISTAFSD---PLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYT 481
VNR +A T + +P P M ESSES + E H D D D YT
Sbjct: 393 VNRENAKCFTTKEELGKTVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYT 452
Query: 482 ADE 490
DE
Sbjct: 453 DDE 455
>AL049844-4|CAI21446.1| 634|Homo sapiens phosphatase and actin
regulator 2 protein.
Length = 634
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +2
Query: 311 VNRADANISTAFSD---PLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYT 481
VNR +A T + +P P M ESSES + E H D D D YT
Sbjct: 393 VNRENAKCFTTKEELGKTVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYT 452
Query: 482 ADE 490
DE
Sbjct: 453 DDE 455
>AB209336-1|BAD92573.1| 968|Homo sapiens neurofibromin variant
protein.
Length = 968
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLN-QEDC 661
L+L+ K L ++ N + T + ++ F D++ S+ DA + FL+ DC
Sbjct: 468 LKLMSKILQSIANHVLFTKEEHMRPFNDFVKSNFDAAR-RFFLDIASDC 515
>AB014580-1|BAA31655.2| 635|Homo sapiens KIAA0680 protein protein.
Length = 635
Score = 29.9 bits (64), Expect = 9.6
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +2
Query: 311 VNRADANISTAFSD---PLPGSSAPRYMYESSESDTYMEPARHTAEHYTDQDKDYNAAYT 481
VNR +A T + +P P M ESSES + E H D D D YT
Sbjct: 394 VNRENAKCFTTKEELGKTVPQLLTPGLMGESSESFSASEDEGHREYQANDSDSDGPILYT 453
Query: 482 ADE 490
DE
Sbjct: 454 DDE 456
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,106,769
Number of Sequences: 237096
Number of extensions: 1605702
Number of successful extensions: 4814
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4814
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -