Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22e12
         (492 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4MIZ6 Cluster: Putative uncharacterized protein; n=1; ...    33   3.5  
UniRef50_A3LP77 Cluster: Predicted protein; n=2; Saccharomycetac...    33   3.5  
UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.6  

>UniRef50_Q4MIZ6 Cluster: Putative uncharacterized protein; n=1;
           Bacillus cereus G9241|Rep: Putative uncharacterized
           protein - Bacillus cereus G9241
          Length = 140

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 398 NSSIVHSITYSKTISSSF*-NCYGVLLTFSSISTKPQQSPSIKPTV 264
           N  I H  TYS +I+SSF  +C GV   F SIST      S+ P++
Sbjct: 33  NIIISHVSTYSSSITSSFSASCCGVFFIFVSISTTSSFVTSMPPSL 78


>UniRef50_A3LP77 Cluster: Predicted protein; n=2;
           Saccharomycetaceae|Rep: Predicted protein - Pichia
           stipitis (Yeast)
          Length = 958

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -2

Query: 452 LSHITIYITFVHYKHSFINSSIVHSITYSKTISSSF*NCYGVLLTFSSISTKPQQSPSIK 273
           LS I I  T    ++S+I+  +V+  T+     S+    Y  LLT S+    P  SP + 
Sbjct: 511 LSQIAIVETDDDKENSYIDKVVVNGFTHIALFESATSKDYARLLTSSNTWEVPLSSPLVH 570

Query: 272 PTVFNIQY 249
              FN+ Y
Sbjct: 571 DKQFNVVY 578


>UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 83

 Score = 32.7 bits (71), Expect = 4.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 491 FFFAVLVIDYCVFLSHITIYITFVHYKHSFINSSIV 384
           FFF VL   YC  +S+IT Y+    Y + +I  SI+
Sbjct: 44  FFFVVLCNIYCFHISYITFYLHIYIYIYIYIYISII 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,651,539
Number of Sequences: 1657284
Number of extensions: 5828596
Number of successful extensions: 11706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11697
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)