Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22e09
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    28   1.4  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   5.7  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   5.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   7.5  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    26   7.5  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    26   7.5  

>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 156 RHCCEFSTHCRWRRDLGS*KQFELVDCAFETTSSLSFH--AYHIIKFIYII 10
           ++C   + HC    DL S K +        TT+  SFH  AY+    +YII
Sbjct: 116 QYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSFHEEAYYSFLLLYII 166


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 178 CSETQDTRSRRQRQFFVRTRPDCTAMQSELDFCTI-*KSECSFI 306
           CS     R++  RQF  R+RPD T+  +   +C    +S C+F+
Sbjct: 442 CSLCGFNRTQPLRQFEFRSRPDSTS-HASCTYCVARLRSVCNFV 484


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -2

Query: 407 QLGKLYSCLVKITHRSRVHSKRSRYGKTPLESICIKEHSDFQIVQKSSSDCIAVQSGRV 231
           Q+ ++ SC V + HRS    K  R     LE +  +  +   +++    DC+ +QS ++
Sbjct: 515 QVTEINSCRV-LQHRSNPTLKYERIKAAQLEMLNAENSALKALLEDKKVDCLPIQSFKI 572


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 490 YFNILIIETIYDVIIGFIFKPISVA 564
           YFN LII TI+D + G   K  + A
Sbjct: 649 YFNKLIINTIFDSVDGLTSKDATFA 673


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 146 VNSRRIVAGVATLDRKNNSNLLIVHSKRHPHY 51
           +   R+ AGV  L       LL+  +K+HP +
Sbjct: 38  ITGARLAAGVVALSADKRKVLLVSSAKKHPSW 69


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 98  NNSNLLIVHSKRHPHYHF-THIILLN 24
           NN+NL I+ + R P  HF  H  +LN
Sbjct: 92  NNANLRIIRAPRGPSLHFRIHEYMLN 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,637
Number of Sequences: 5004
Number of extensions: 63105
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)