Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22e09
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0126 + 4582214-4582453,4582539-4584201,4584244-4584584,458...    30   2.6  
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397...    30   2.6  
07_03_1788 + 29523216-29524867,29525048-29525075                       29   4.5  

>09_02_0126 +
           4582214-4582453,4582539-4584201,4584244-4584584,
           4584809-4584999,4585080-4585190,4585278-4585338,
           4585610-4585795
          Length = 930

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 240 RTRSYEKLSLPSRSCVLSFTALSLSHRSRHCCEFSTH 130
           +TR+ EKL LP   C  SF    +++  R  C F  H
Sbjct: 861 QTRTREKLLLPRLECRTSFDDTGITNVQRDLCHFIHH 897


>03_05_0791 +
           27736978-27737217,27737648-27739191,27739512-27739763,
           27739844-27739954,27740042-27740102,27740373-27740558
          Length = 797

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 240 RTRSYEKLSLPSRSCVLSFTALSLSHRSRHCCEFSTH 130
           +TR+ EKL LP   C  SF    +++  R  C F  H
Sbjct: 728 QTRTREKLLLPRLECRTSFDDTGITNVQRDLCHFIHH 764


>07_03_1788 + 29523216-29524867,29525048-29525075
          Length = 559

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 65  VSNAQSTSSNC-FYDPRSRRQRQCVENSQQCRDRCDND-NAVKLRTQDRDGSDNFS*ERV 238
           VS A +T +NC  Y P  RR R+  E  ++  D  D D +  K    D D   +F  +RV
Sbjct: 214 VSAAAATPNNCNSYPPSRRRGRKRKEVEEEILDDSDEDWDPRKKGATDSDSEVDFDRKRV 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,803,890
Number of Sequences: 37544
Number of extensions: 376072
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)