Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22e09
         (828 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U48801-1|AAB06274.1|  188|Homo sapiens vascular endothelial grow...    32   2.9  
U43369-1|AAA91463.1|  188|Homo sapiens VEGF related factor isofo...    32   2.9  
BC101099-1|AAI01100.1|  461|Homo sapiens Usher syndrome 1G (auto...    32   2.9  
BC101098-1|AAI01099.1|  461|Homo sapiens Usher syndrome 1G (auto...    32   2.9  
BC101097-1|AAI01098.1|  461|Homo sapiens Usher syndrome 1G (auto...    32   2.9  
BC101096-1|AAI01097.1|  461|Homo sapiens Usher syndrome 1G (auto...    32   2.9  
AK091243-1|BAC03619.1|  461|Homo sapiens protein ( Homo sapiens ...    32   2.9  

>U48801-1|AAB06274.1|  188|Homo sapiens vascular endothelial growth
           factor B precursor protein.
          Length = 188

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 18/74 (24%), Positives = 28/74 (37%)
 Frame = -2

Query: 386 CLVKITHRSRVHSKRSRYGKTPLESICIKEHSDFQIVQKSSSDCIAVQSGRVLTKNCRCR 207
           C+    H+ R+     RY  + L  + ++EHS  +   K     +   S R L   C   
Sbjct: 89  CVPTGQHQVRMQILMIRYPSSQLGEMSLEEHSQCECRPKKKDSAVKPDSPRPLCPRCTQH 148

Query: 206 RDLVS*VSLHCRCR 165
                  +  CRCR
Sbjct: 149 HQRPDPRTCRCRCR 162


>U43369-1|AAA91463.1|  188|Homo sapiens VEGF related factor isoform
           VRF167 precursor protein.
          Length = 188

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 18/74 (24%), Positives = 28/74 (37%)
 Frame = -2

Query: 386 CLVKITHRSRVHSKRSRYGKTPLESICIKEHSDFQIVQKSSSDCIAVQSGRVLTKNCRCR 207
           C+    H+ R+     RY  + L  + ++EHS  +   K     +   S R L   C   
Sbjct: 89  CVPTGQHQVRMQILMIRYPSSQLGEMSLEEHSQCECRPKKKDSAVKPDSPRPLCPRCTQH 148

Query: 206 RDLVS*VSLHCRCR 165
                  +  CRCR
Sbjct: 149 HQRPDPRTCRCRCR 162


>BC101099-1|AAI01100.1|  461|Homo sapiens Usher syndrome 1G
           (autosomal recessive) protein.
          Length = 461

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 291 RLSDCAKIQFRLHRRTVRTRSYEKLSLPSRSCVLSFTALSLSHRSR 154
           R+ +CAK+Q R H R    R Y +  L  RS  LSF++L+ S  SR
Sbjct: 146 RIRECAKLQRRHHER--MERRYRR-ELAERSDTLSFSSLTSSTLSR 188


>BC101098-1|AAI01099.1|  461|Homo sapiens Usher syndrome 1G
           (autosomal recessive) protein.
          Length = 461

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 291 RLSDCAKIQFRLHRRTVRTRSYEKLSLPSRSCVLSFTALSLSHRSR 154
           R+ +CAK+Q R H R    R Y +  L  RS  LSF++L+ S  SR
Sbjct: 146 RIRECAKLQRRHHER--MERRYRR-ELAERSDTLSFSSLTSSTLSR 188


>BC101097-1|AAI01098.1|  461|Homo sapiens Usher syndrome 1G
           (autosomal recessive) protein.
          Length = 461

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 291 RLSDCAKIQFRLHRRTVRTRSYEKLSLPSRSCVLSFTALSLSHRSR 154
           R+ +CAK+Q R H R    R Y +  L  RS  LSF++L+ S  SR
Sbjct: 146 RIRECAKLQRRHHER--MERRYRR-ELAERSDTLSFSSLTSSTLSR 188


>BC101096-1|AAI01097.1|  461|Homo sapiens Usher syndrome 1G
           (autosomal recessive) protein.
          Length = 461

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 291 RLSDCAKIQFRLHRRTVRTRSYEKLSLPSRSCVLSFTALSLSHRSR 154
           R+ +CAK+Q R H R    R Y +  L  RS  LSF++L+ S  SR
Sbjct: 146 RIRECAKLQRRHHER--MERRYRR-ELAERSDTLSFSSLTSSTLSR 188


>AK091243-1|BAC03619.1|  461|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33924 fis, clone CTONG2017094, weakly similar to
           MYOTROPHIN. ).
          Length = 461

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -1

Query: 291 RLSDCAKIQFRLHRRTVRTRSYEKLSLPSRSCVLSFTALSLSHRSR 154
           R+ +CAK+Q R H R    R Y +  L  RS  LSF++L+ S  SR
Sbjct: 146 RIRECAKLQRRHHER--MERRYRR-ELAERSDTLSFSSLTSSTLSR 188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,029,317
Number of Sequences: 237096
Number of extensions: 2102836
Number of successful extensions: 4575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4575
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)