Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22e01
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    30   1.4  
Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    27   9.7  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    27   9.7  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 286 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 140
           +G+E  E+ + AG+ YC   +D  R   C    G W L ET     + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487


>Z67755-6|CAA91759.1|  311|Caenorhabditis elegans Hypothetical
           protein F54F7.6 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 507 SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFVV 635
           ++ FT + T  ++ R  N++  +CI+ + E P  F  +  FVV
Sbjct: 48  TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 163 GFALLCSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSD 2
           G+A +C  L  G   +  + E C  P  C     + +       CVCDDG+  D
Sbjct: 279 GYACICKPLWTGRNCENPVPEACT-PSPCLNGTCVLNDQYNKFTCVCDDGFFGD 331


>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 79   CAPHGRIDDINSASIRCVCDDGY 11
            C PHG+  +I+  + +C C  GY
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY 2623


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 79   CAPHGRIDDINSASIRCVCDDGY 11
            C PHG+  +I+  + +C C  GY
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY 3207


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 79   CAPHGRIDDINSASIRCVCDDGY 11
            C PHG+  +I+  + +C C  GY
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY 2623


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 79   CAPHGRIDDINSASIRCVCDDGY 11
            C PHG+  +I+  + +C C  GY
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY 3207


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 79   CAPHGRIDDINSASIRCVCDDGY 11
            C PHG+  +I+  + +C C  GY
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY 3207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,588
Number of Sequences: 27780
Number of extensions: 357333
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)