Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d24
         (666 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.6  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   5.0  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   8.7  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 48   RLPLEIIDTILQYLDPISHAKVVGLTTRVKCR 143
            ++P   +D I Q +DP +  KV  +     CR
Sbjct: 959  QVPFRCVDEINQGMDPTNERKVFNMLVEETCR 990



 Score = 24.6 bits (51), Expect = 2.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 138 CRLLRDNNVEDYLKLTPANYHFTTDQFIC 224
           C+ L  + V+D+ K+ P      T   +C
Sbjct: 134 CQFLPQDRVQDFTKMNPRELLLNTQSSVC 162


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 36  AKRIRLPLEIIDTILQYLDPISH 104
           AKR RL   ++D+IL+Y  P+ H
Sbjct: 795 AKR-RLLASVVDSILRYAAPVWH 816


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 173 IIFNVVVAQKSAFYT 129
           IIFN+ + +K+ FYT
Sbjct: 229 IIFNITLRRKTLFYT 243


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,015
Number of Sequences: 2352
Number of extensions: 14446
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)