Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22d21
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-3|CAM36344.1| 204|Caenorhabditis elegans Hypothetical ... 30 1.3
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 29 2.3
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 29 2.3
U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical ... 28 5.3
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 28 5.3
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 28 7.0
Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical pr... 27 9.2
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 27 9.2
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 27 9.2
>CU457741-3|CAM36344.1| 204|Caenorhabditis elegans Hypothetical
protein C42C1.3 protein.
Length = 204
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = +2
Query: 86 RISAVNPHEFGTVTKNAVVEIRSRNQRRTSARK 184
++S + PH+ +V KNA+ ++S+ +++TS +K
Sbjct: 156 KLSKIAPHQHSSVVKNAI--MKSKREKKTSCKK 186
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 532 CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 651
CGRCRC S C C CV+Y +C+ C
Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 532 CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 651
CGRCRC S C C CV+Y +C+ C
Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663
>U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical
protein C05D9.3 protein.
Length = 423
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Frame = +1
Query: 514 SIVCETCGRCRCEQCARPRPLPSRWLC----GSC-------LCSAEACVDYASCMC 648
S VC G+C+C QC +P + C SC +CS D C C
Sbjct: 277 SPVCSASGKCKCGQCQCNKPTVTGKFCQCDNDSCPLAVNGKVCSGNGVCDCGVCKC 332
>AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical
protein C09E8.1a protein.
Length = 783
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 IRTSSERSQKTPSSRSEVEINE-ELQRGSGDDEG 200
IR S + ++R E++E EL RG+GDD G
Sbjct: 734 IRAHSVEHNRPSNTREASEVDEAELPRGAGDDNG 767
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +1
Query: 511 DSIVCETCGRCRCEQCAR---PRPLPSRWLCGSC 603
D ++C C C +CA+ P+ W+C SC
Sbjct: 1126 DLVLCSECDNCYHLKCAKLDVNSDAPADWMCTSC 1159
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 95 AVNPHEFGTVTKNAVVEIRSRNQRRTSARKWGR*GNRKATAR 220
A NP++ T+N V RSRN T+ RK GR G + +++
Sbjct: 244 AENPYQ----TRNGVNNYRSRNSYGTNNRKHGRNGKKGKSSK 281
>Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical
protein R10E8.4 protein.
Length = 534
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 186 HFLAEVLR*FLLLISTTAFFVTVPNSCGFTALIL 85
H + E+LR +L+ F +TVP+ G A IL
Sbjct: 117 HHITEILRKREILLKVNEFVLTVPSKNGHVASIL 150
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = +1
Query: 532 CGRCRCE-QCARP-----RPLPSRWLCGSCLCSAEACVDY 633
CG C + +CARP R +P WL S LC D+
Sbjct: 844 CGWCSLDSKCARPHQCSNRQIPENWLNASQLCPNPVIEDF 883
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = +1
Query: 532 CGRCRCE-QCARP-----RPLPSRWLCGSCLCSAEACVDY 633
CG C + +CARP R +P WL S LC D+
Sbjct: 850 CGWCSLDSKCARPHQCSNRQIPENWLNASQLCPNPVIEDF 889
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,977
Number of Sequences: 27780
Number of extensions: 184922
Number of successful extensions: 653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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