Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d20
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   1.3  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   1.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   3.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    23   5.4  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    23   5.4  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 81  SHLQLITLCLSRLHLDFLLYSPQE 152
           SH+Q+I+  +S+ H  F + +P E
Sbjct: 34  SHIQVISKSISKRHARFTILTPSE 57


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 121 CSRERHNVINCRCECTQNVEXAQDDNSQEK 32
           C    +  INCRC  ++  E A  D S  K
Sbjct: 29  CVSNENGCINCRCSPSEPHESANVDESVNK 58


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 918

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 32 LFLTIVILSXFYILRTFT 85
          +F  I+++S FY L++FT
Sbjct: 26 IFFAIILISNFYGLKSFT 43


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 165  HLHLVPVESRARSPDAAVRDTM 100
            H  LV + SRAR PD   R T+
Sbjct: 1058 HTQLVSLISRARDPDYYSRPTI 1079


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 79  IHTYS*LHCVSHGCIWTSC 135
           + TY   HC S GCI   C
Sbjct: 10  VTTYGESHCKSVGCIVEGC 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,117
Number of Sequences: 5004
Number of extensions: 8448
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)