Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d20
         (165 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    26   3.6  
09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390...    26   3.6  
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765...    25   6.2  
03_01_0616 + 4527148-4527507,4528285-4528293,4529160-4529498           25   6.2  
02_01_0413 - 3028946-3031111                                           25   6.2  

>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 21  TITHFS*LLSS*AXSTFCVHSHLQLITLCLSRLHLDFL 134
           T+THF  + S  +  TF + S   +   CLS  H D L
Sbjct: 213 TVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSL 250


>09_04_0723 +
           19736958-19737107,19737979-19738480,19738911-19739061,
           19739659-19739766,19739789-19739818,19739894-19740303,
           19740797-19740882,19740989-19741058,19741413-19741585,
           19741644-19741725,19742131-19742288
          Length = 639

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 72  CVHSHLQLITLCLSRLHLDFLLYSPQE 152
           C+HS+L +  +C  + H D  L  P+E
Sbjct: 301 CLHSYLCMKEVCCRKWHFDSSLSMPKE 327


>08_02_1423 +
           26975466-26975508,26976253-26976365,26976505-26976561,
           26976607-26976801,26976912-26977060,26977145-26977307,
           26977865-26977957,26978075-26978158,26978865-26979004,
           26979093-26979192
          Length = 378

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 75  VHSHLQLITLCLSRLHLDFLLYSPQEPS 158
           +HS L L  + L   +L F  Y P +PS
Sbjct: 47  LHSLLNLFYMILPAAYLRFRFYEPSDPS 74


>03_01_0616 + 4527148-4527507,4528285-4528293,4529160-4529498
          Length = 235

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 106 HNVINCRCECTQNVEXAQDDNSQEKCV 26
           H V   RC   + V+ + DD S  KCV
Sbjct: 156 HPVFQSRCFFVRRVDGSSDDFSFRKCV 182


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 72  CVHSHLQLITLCLSRLHLDFLLYSPQEPSE 161
           C+ S L  +T  LSRL+L + L S + PSE
Sbjct: 97  CISSSLSELT-SLSRLNLSYNLLSSELPSE 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,003,589
Number of Sequences: 37544
Number of extensions: 52860
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)