Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d20
         (165 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006669-1|AAP35315.1|  185|Homo sapiens signal sequence recepto...    54   8e-08
BC017203-1|AAH17203.1|  185|Homo sapiens signal sequence recepto...    54   8e-08
AF110647-1|AAD48587.1|  185|Homo sapiens translocon-associated p...    54   8e-08
AF087907-1|AAP97205.1|  185|Homo sapiens SSR gamma protein.            54   8e-08

>BT006669-1|AAP35315.1|  185|Homo sapiens signal sequence receptor,
           gamma (translocon-associated protein gamma) protein.
          Length = 185

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2

Query: 2   TTYSIFYXNALFLTIVILSXFYILRTFTPTVNYIV 106
           TT+SIFY N LFL +VI++ F+IL+ F PTVNYI+
Sbjct: 134 TTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168


>BC017203-1|AAH17203.1|  185|Homo sapiens signal sequence receptor,
           gamma (translocon-associated protein gamma) protein.
          Length = 185

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2

Query: 2   TTYSIFYXNALFLTIVILSXFYILRTFTPTVNYIV 106
           TT+SIFY N LFL +VI++ F+IL+ F PTVNYI+
Sbjct: 134 TTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168


>AF110647-1|AAD48587.1|  185|Homo sapiens translocon-associated
           protein gamma subunit protein.
          Length = 185

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2

Query: 2   TTYSIFYXNALFLTIVILSXFYILRTFTPTVNYIV 106
           TT+SIFY N LFL +VI++ F+IL+ F PTVNYI+
Sbjct: 134 TTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168


>AF087907-1|AAP97205.1|  185|Homo sapiens SSR gamma protein.
          Length = 185

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 22/35 (62%), Positives = 29/35 (82%)
 Frame = +2

Query: 2   TTYSIFYXNALFLTIVILSXFYILRTFTPTVNYIV 106
           TT+SIFY N LFL +VI++ F+IL+ F PTVNYI+
Sbjct: 134 TTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,492,412
Number of Sequences: 237096
Number of extensions: 331828
Number of successful extensions: 467
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 76,859,062
effective HSP length: 34
effective length of database: 68,797,798
effective search space used: 1375955960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)