Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22d20
(165 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025715-7|AAK68443.1| 178|Caenorhabditis elegans Hypothetical ... 38 0.001
AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical... 28 1.0
U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched fami... 26 4.1
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 25 5.5
Z29121-1|CAA82387.3| 324|Caenorhabditis elegans Hypothetical pr... 25 5.5
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 25 5.5
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 25 5.5
AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical... 25 7.2
Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF125964-3|ABA03110.1| 805|Caenorhabditis elegans Hypothetical ... 25 9.5
AF047655-2|ABD63245.1| 805|Caenorhabditis elegans Hypothetical ... 25 9.5
AF025465-10|AAB71023.1| 805|Caenorhabditis elegans Hypothetical... 25 9.5
AF016422-2|AAG24174.1| 805|Caenorhabditis elegans Hypothetical ... 25 9.5
AC024831-3|ABD63213.1| 805|Caenorhabditis elegans Hypothetical ... 25 9.5
>AC025715-7|AAK68443.1| 178|Caenorhabditis elegans Hypothetical
protein Y38F2AR.2 protein.
Length = 178
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +2
Query: 2 TTYSIFYXNALFLTIVILSXFYILRTFTPTVNYIV 106
T S+FY N+L+LTI+++S F++L P N ++
Sbjct: 127 TYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLI 161
>AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical
protein Y54G2A.27 protein.
Length = 229
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 37 PDYCHLEXFLH---SAYIHTYS*LHCVSHGCIWTSCSTLHRNQ 156
P C L +H S+YI+ YS LH +SH T+ +T N+
Sbjct: 70 PSVCPLHPSIHLSSSSYIYIYSQLHMLSHNGGPTTTTTTTPNR 112
>U50308-6|AAG24025.2| 936|Caenorhabditis elegans Dispatched family
protein 2 protein.
Length = 936
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 2 TTYSIFYXNALFLTIVILSXFYILRTFTPTVNYIV 106
TT S F N L +++L F + T TVNYI+
Sbjct: 450 TTASTFLTN-LSSPVIVLRCFGVYAALTVTVNYIL 483
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 94 NCRCECTQNVEXAQDDNSQEKCVXVEN 14
N CEC +N AQ D +E VEN
Sbjct: 957 NGECECKENYIGAQCDRCKENHGDVEN 983
>Z29121-1|CAA82387.3| 324|Caenorhabditis elegans Hypothetical
protein ZK757.1 protein.
Length = 324
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 32 LFLTIVILSXFYILRTFTPTVNYI 103
LFL I + ++LRTF PT+ ++
Sbjct: 37 LFLCIFFICRPHLLRTFKPTIFFV 60
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 94 NCRCECTQNVEXAQDDNSQEKCVXVEN 14
N CEC +N AQ D +E VEN
Sbjct: 957 NGECECKENYIGAQCDRCKENHGDVEN 983
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 94 NCRCECTQNVEXAQDDNSQEKCVXVEN 14
N CEC +N AQ D +E VEN
Sbjct: 957 NGECECKENYIGAQCDRCKENHGDVEN 983
>AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical
protein Y75B8A.25 protein.
Length = 570
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 87 LQLITLCLSRLHLDF 131
LQLIT C RLH D+
Sbjct: 514 LQLITTCKPRLHTDY 528
>Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical
protein K02B7.1 protein.
Length = 742
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 79 CTQNVEXAQDDNSQEKC 29
C QN+E + ++ QEKC
Sbjct: 190 CAQNIELCKCEDMQEKC 206
>AF125964-3|ABA03110.1| 805|Caenorhabditis elegans Hypothetical
protein W03G1.4 protein.
Length = 805
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 79 CTQNVEXAQDDNSQEKC 29
C QN+E + ++ QEKC
Sbjct: 190 CAQNIELCKCEDMQEKC 206
>AF047655-2|ABD63245.1| 805|Caenorhabditis elegans Hypothetical
protein C17B7.7 protein.
Length = 805
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 79 CTQNVEXAQDDNSQEKC 29
C QN+E + ++ QEKC
Sbjct: 190 CAQNIELCKCEDMQEKC 206
>AF025465-10|AAB71023.1| 805|Caenorhabditis elegans Hypothetical
protein K02E7.3 protein.
Length = 805
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 79 CTQNVEXAQDDNSQEKC 29
C QN+E + ++ QEKC
Sbjct: 190 CAQNIELCKCEDMQEKC 206
>AF016422-2|AAG24174.1| 805|Caenorhabditis elegans Hypothetical
protein R09E12.6 protein.
Length = 805
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 79 CTQNVEXAQDDNSQEKC 29
C QN+E + ++ QEKC
Sbjct: 190 CAQNIELCKCEDMQEKC 206
>AC024831-3|ABD63213.1| 805|Caenorhabditis elegans Hypothetical
protein Y55F3C.6 protein.
Length = 805
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 79 CTQNVEXAQDDNSQEKC 29
C QN+E + ++ QEKC
Sbjct: 190 CAQNIELCKCEDMQEKC 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,424
Number of Sequences: 27780
Number of extensions: 52042
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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