Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d20
         (165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    19   5.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   7.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    18   9.7  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 159 HLVPVESRARSPDAAVRDTM*LTVGVNVRRM*KXLKMTI 43
           H++P E  A+     VR +  +T+    R+  K + +TI
Sbjct: 18  HVIPAELTAKLLGNCVRVSPVITIEPRRRKFHKPITLTI 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 103 NVINCRCECTQNVEXAQDDNSQE 35
           N  +CRC+  Q +     DN+ +
Sbjct: 924 NPWSCRCKFLQELSSWVSDNAHK 946


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 136 SKKSRCSRERH 104
           S++ RCSR+R+
Sbjct: 232 SRERRCSRDRN 242


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 103 CVSHGCIWTSCSTLHR 150
           C S+G I+ +   LHR
Sbjct: 118 CASNGKIYANHCELHR 133


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 123 LDFLLYSPQEP 155
           LD +LY  QEP
Sbjct: 168 LDMVLYWDQEP 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,100
Number of Sequences: 438
Number of extensions: 725
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)