Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d19
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697...    29   2.2  
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28...    28   3.8  
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326...    27   5.0  
03_05_0897 - 28605324-28605928,28606725-28606899                       27   6.6  
12_02_1092 - 26011445-26012071,26012826-26014022,26014083-260142...    27   8.7  
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161...    27   8.7  

>07_03_0006 +
           12268852-12269146,12269362-12269487,12269536-12269753,
           12269918-12270292,12270376-12270610,12270698-12270861
          Length = 470

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = +1

Query: 13  VCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR------ 174
           V D GNN F  + P K  L R ++    N     +       +V N++K AIP+      
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344

Query: 175 -NKFKAKHNRITLLEDYTREELMNVI 249
             ++ A H ++ +L+     E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370


>10_01_0021 -
           281130-281224,281758-281842,281916-281971,282408-282584,
           282686-282805,283004-283096,283548-283668,283772-283804,
           284001-284082,286600-286739
          Length = 333

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 169 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 285
           P N  +  HNR ++L++     L N  G   T RQ+  M
Sbjct: 99  PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137


>04_01_0248 +
           3254493-3254599,3258414-3258681,3260797-3261074,
           3261708-3261711,3263037-3263118,3263196-3263220,
           3263498-3263599,3264123-3264306,3264902-3265068,
           3265233-3265866
          Length = 616

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 16  CDVGNNEFAFLRPQKRSLGRSLKRLGSND 102
           C V    F +L P  + LGR  K+LG  D
Sbjct: 341 CSVLTPCFTYLNPTNKQLGRLFKKLGYGD 369


>03_05_0897 - 28605324-28605928,28606725-28606899
          Length = 259

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 356 FAGHPMLKRLTTYKNFYCALRKLFMRAICRSVIV 255
           FAG   LK+LT +K  + +  +  M++ CR+ ++
Sbjct: 223 FAGFANLKKLTLHKVLFLSDSQCLMQSCCRNALL 256


>12_02_1092 -
           26011445-26012071,26012826-26014022,26014083-26014286,
           26014316-26014385,26014440-26014479,26015566-26015632,
           26015718-26015740,26017985-26018081,26018553-26018614,
           26018913-26019297,26019924-26020007,26020383-26020467,
           26020579-26020790,26020881-26021030
          Length = 1100

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 117 AAKDDVVRTQSFQAAAQRSFLRAQKRKLVVA 25
           AA+ D V  Q+F  AA  +F      KLV+A
Sbjct: 266 AAEADAVAAQAFAEAAMATFKNRSSAKLVIA 296


>03_05_1133 -
           30614901-30615389,30615823-30615933,30616113-30616178,
           30616347-30616406,30616493-30616801,30616960-30617108,
           30617200-30617269,30617370-30617494,30617516-30617573,
           30618176-30618370,30618585-30618857,30618950-30619120,
           30619203-30619333,30619423-30619582,30619712-30619900,
           30620023-30620118,30620381-30620611,30620715-30620853,
           30620903-30621057,30621160-30621378
          Length = 1131

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 237 NERDRLHYDRPTNCAHEQFAQRAIKIFICRQAFKHWVTSKVLS*CII 377
           + RDR  YD+  N A      R   I IC   F  W  S++    I+
Sbjct: 104 DRRDRRDYDQIANLAKRMGLYRCRNIEICGLVFSLWNGSEMYGKVIV 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,517,019
Number of Sequences: 37544
Number of extensions: 184051
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)