Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d18
         (279 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   1.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   1.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    19   9.9  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 150 STRKASSVLKNK*HHFLNLVLKN 82
           S +KA  ++ +K +  LN+ LKN
Sbjct: 11  SRQKAPKIVNSKYNSILNIALKN 33


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 150 STRKASSVLKNK*HHFLNLVLKN 82
           S +KA  ++ +K +  LN+ LKN
Sbjct: 11  SRQKAPKIVNSKYNSILNIALKN 33


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.0 bits (37), Expect = 9.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 45  STCKTQSRDDVICFSKLNLRNDVICFSKLNSLYE*NSTCKTQSR 176
           +TC   S DD+   +  ++R   + FSK   L   +   KT S+
Sbjct: 113 TTCSYYSLDDLSEDTFYDIRLWGVSFSKKQILRSDDLAVKTTSK 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,529
Number of Sequences: 336
Number of extensions: 875
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4684108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)