Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d18
         (279 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U11701-1|AAB08752.1|  423|Homo sapiens LIM-homeobox domain prote...    28   4.6  
BC112185-1|AAI12186.1|  406|Homo sapiens LIM homeobox protein 2 ...    28   4.6  
BC093662-1|AAH93662.1|  406|Homo sapiens LIM homeobox 2 protein.       28   4.6  
AK094511-1|BAC04371.1|  397|Homo sapiens protein ( Homo sapiens ...    28   4.6  
AF124735-1|AAD20013.1|  389|Homo sapiens LIM-homeodomain protein...    28   4.6  

>U11701-1|AAB08752.1|  423|Homo sapiens LIM-homeobox domain protein
           protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  CFSKLNLRNDVICFSKLNSLY 143
           C  KLNL +++ CFSK  S+Y
Sbjct: 80  CECKLNLESELTCFSKDGSIY 100


>BC112185-1|AAI12186.1|  406|Homo sapiens LIM homeobox protein 2
           protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  CFSKLNLRNDVICFSKLNSLY 143
           C  KLNL +++ CFSK  S+Y
Sbjct: 81  CECKLNLESELTCFSKDGSIY 101


>BC093662-1|AAH93662.1|  406|Homo sapiens LIM homeobox 2 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  CFSKLNLRNDVICFSKLNSLY 143
           C  KLNL +++ CFSK  S+Y
Sbjct: 81  CECKLNLESELTCFSKDGSIY 101


>AK094511-1|BAC04371.1|  397|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37192 fis, clone BRALZ2003525, highly similar to
           LIM/HOMEOBOX PROTEIN LHX2. ).
          Length = 397

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  CFSKLNLRNDVICFSKLNSLY 143
           C  KLNL +++ CFSK  S+Y
Sbjct: 64  CECKLNLESELTCFSKDGSIY 84


>AF124735-1|AAD20013.1|  389|Homo sapiens LIM-homeodomain protein
           HLHX2 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 81  CFSKLNLRNDVICFSKLNSLY 143
           C  KLNL +++ CFSK  S+Y
Sbjct: 64  CECKLNLESELTCFSKDGSIY 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,524,924
Number of Sequences: 237096
Number of extensions: 355265
Number of successful extensions: 4612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4612
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1325771524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)