Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d12
         (331 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   1.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   5.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    20   5.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   5.8  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    20   7.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          20   7.7  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +3

Query: 69  KYGTR-YGASLRKMVKKMEVTQHAKYTCSFCGK 164
           KY  R +  S   ++ +   T    Y+C  CGK
Sbjct: 83  KYCNRQFTKSYNLLIHERTHTDERPYSCDICGK 115


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 100 VKWSKRWK*PNTQSI 144
           +KW K  K PNT+++
Sbjct: 286 MKWKKDNKLPNTKNV 300


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -3

Query: 167 ILTTK*ASILCVLGYFHLFDHFT*RGTVTCAIFASNSNL 51
           I T     +LC+  +F  F  FT      CA    N +L
Sbjct: 155 IFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHL 193


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 100 VKWSKRWK*PNTQSI 144
           +KW K  K PNT+++
Sbjct: 286 MKWKKDNKLPNTKNV 300


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 5   NFCIGEVYQNGQTYQKGWN--YWQ 70
           N+   + Y N   YQ+G++  Y+Q
Sbjct: 214 NYQYNQAYSNYNNYQEGFSCQYYQ 237


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 5   NFCIGEVYQNGQTYQKGWN--YWQ 70
           N+   + Y N   YQ+G++  Y+Q
Sbjct: 234 NYQYNQAYSNYNNYQEGFSCQYYQ 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,116
Number of Sequences: 336
Number of extensions: 1854
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)