Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22d12
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 131 1e-31
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 130 3e-31
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 1.2
07_01_0385 - 2871628-2872131 28 2.0
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.7
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 27 2.7
07_03_1237 + 25073010-25073513 27 4.7
02_01_0679 - 5048653-5051394 26 6.2
07_03_0039 - 12718972-12720699 26 8.3
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 131 bits (317), Expect = 1e-31
Identities = 57/89 (64%), Positives = 69/89 (77%)
Frame = +3
Query: 30 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 209
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 210 CKRTVAGGAWVFSTTAASSCRSAVRRLRE 296
C + AGGA+ +T +A + RS +RRLRE
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 130 bits (314), Expect = 3e-31
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = +3
Query: 39 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 218
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 219 TVAGGAWVFSTTAASSCRSAVRRLRE 296
AGGA+ +T +A + RS +RRLRE
Sbjct: 93 VKAGGAYTMNTASAVTVRSTIRRLRE 118
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 156 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 293
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 141 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 239
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 120 EVTQHAKYTCSFCGKDAM 173
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = +3
Query: 3 STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 179
S + RF ++V K G Y L K AKYT G A R
Sbjct: 60 SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119
Query: 180 SCVGIWSCKRCKRTV 224
S G SCK ++ V
Sbjct: 120 SSAGAVSCKLREKNV 134
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 174 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 269
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +1
Query: 4 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 123
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>07_03_0039 - 12718972-12720699
Length = 575
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 247 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 95
EN A +LH +D + QERF L + + C + S+F IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,142,326
Number of Sequences: 37544
Number of extensions: 184624
Number of successful extensions: 510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -