Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22d09
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920 29 3.1
03_05_0421 + 24065725-24066052,24066811-24067040 29 4.1
01_07_0283 - 42467027-42467056,42467125-42467305,42467659-42467729 29 4.1
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 29 5.4
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 29 5.4
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 29 5.4
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 29 5.4
06_02_0035 + 10816723-10819497,10819964-10820011 28 7.2
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152... 28 9.5
07_03_1386 - 26192019-26192073,26192272-26192397,26192570-261926... 28 9.5
07_03_0325 - 16809700-16809774,16810262-16810316,16810467-168107... 28 9.5
06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407 28 9.5
05_01_0030 + 195663-196691 28 9.5
>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
Length = 128
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 214 ARCSAPPQRQNAPPPKARIKQ*RLPSRLCVSYRSL--GMTDLLVALRHLIYPTAIWPRD 44
AR PP RQ PP+A + +P + Y SL D L +LR + + W R+
Sbjct: 65 ARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVRLLSDWGRN 123
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 246 LGHYPAQG-NAAKGRGNH-HRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTR 398
+G +P+ G GRG HRG+ L R R + PG V RR A + R
Sbjct: 1 MGDWPSAGARLGDGRGEAGHRGEALARARPAIRKRRRPGALVNRRRATPRFAR 53
>01_07_0283 - 42467027-42467056,42467125-42467305,42467659-42467729
Length = 93
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 610 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTV 735
N W+ V ++++ + DD Q+ +LDAEGN I V V
Sbjct: 49 NDRWKIKVKVTRLWDAVNPTMADDFYGIQMIVLDAEGNSIRVKV 92
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 610 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 747
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 14 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 610 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 747
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 14 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 610 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 747
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 392 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 439
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 610 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 747
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 193 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 240
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 252 HYPAQGNAAKGRGNHHR-GDGLQRKRDYW 335
H +G AA G HHR GD + ++ YW
Sbjct: 242 HAAEEGGAAAAAGGHHRAGDPVLQEGHYW 270
>12_01_0203 +
1520079-1520302,1522346-1522405,1522794-1523016,
1523038-1523434,1523522-1523781,1523866-1524011,
1524044-1524317,1524501-1525547
Length = 876
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -3
Query: 109 GMTDLL-VALRHLIY---PTAIWPRDTRHVVKLIIL 14
G DLL V L HL Y P +WP+D R + KL L
Sbjct: 522 GKPDLLDVDLHHLSYVKAPGKVWPKDARPLRKLRFL 557
>07_03_1386 -
26192019-26192073,26192272-26192397,26192570-26192622,
26192722-26192807,26192896-26193017,26193096-26193155,
26193787-26193866,26193949-26194087,26194273-26194367,
26194792-26194860,26195015-26195131,26195839-26195913,
26196590-26196961
Length = 482
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 259 PPKETLQKDVEITIVETDYNENVIIGYKGYYQAY 360
PP T + D EI +E D+++ VIIG ++ Y
Sbjct: 162 PPPLTNKADWEINPLELDFSKAVIIGKDDLFRCY 195
>07_03_0325 -
16809700-16809774,16810262-16810316,16810467-16810737,
16810944-16811079,16812261-16812353,16813019-16813063,
16813409-16813543
Length = 269
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/50 (26%), Positives = 19/50 (38%)
Frame = +1
Query: 454 IRQQCEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYH 603
+R E E L W + ++ D W +G V+ NN F H
Sbjct: 79 LRNMSEYAEYLFQSWRDEDDK--NDESSGPSWFRGHRWVRNPKNNGFRPH 126
>06_01_0330 + 2393882-2394313,2394350-2394610,2394679-2395407
Length = 473
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 298 IVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKT 417
+VE + +N+ + + + Y+GGSL P V+ S+++
Sbjct: 31 VVELSFLDNLQVSKAAIQRLFFYDGGSLPPFESVDRSLQS 70
>05_01_0030 + 195663-196691
Length = 342
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 655 RLECHDDTDECQVYILDAEGNPINV 729
+++CH+D + + I DA GNP N+
Sbjct: 31 KVQCHEDDEAALLAIDDALGNPYNL 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,777,435
Number of Sequences: 37544
Number of extensions: 439837
Number of successful extensions: 1430
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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