Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d08
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   5.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   9.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 379  PPAGGQFPPMTGQRPPSATGQALTAQEGFE 468
            P  G   PP +G   P +TG       GFE
Sbjct: 1105 PLKGTAVPPPSGSSGPGSTGSKSPPVAGFE 1134


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 688 NLTEIVEGPAFPDLAEGLLQVEQPFQ 611
           ++ EIV+    PDL   LLQV Q F+
Sbjct: 372 DVIEIVDKLLNPDLGLSLLQVAQIFK 397


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 576 GAARNATKSTYSWNG-CSTWSSPSARSGNAGPSTISVKFY 692
           GAA   T ++ SWN  CS  S+ S   G       +  FY
Sbjct: 167 GAAAGRTGNSLSWNNPCSINSTSSQPVGTQIHQQTNHTFY 206


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +1

Query: 349 GQRPAPMPIRPPAGGQFP----PMTGQRPPSATGQAL 447
           GQ+ A M  + P   Q P    P  GQ+PP  T  AL
Sbjct: 192 GQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTAAAL 228


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +1

Query: 349 GQRPAPMPIRPPAGGQFP----PMTGQRPPSATGQAL 447
           GQ+ A M  + P   Q P    P  GQ+PP  T  AL
Sbjct: 194 GQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTAAAL 230


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 273  WLTRIQYPSYTATSW--SSTTKFWTRARSTASSNAD*TTCGRTIP 401
            W +    P +T T+   ++TT+  T + +T  +  +  T G TIP
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIP 1087


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 321 STTKFWTRARSTASSNAD*TTCGRTIPSNDRTETSFCNRTGTNS 452
           S  KF+ +     + +    +C  +   N+R E + C R   NS
Sbjct: 368 SNRKFYFKRARNGTFSTTANSCRSSTFRNNRDEYNVCFRPRNNS 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,135
Number of Sequences: 336
Number of extensions: 3449
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)