Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22d08
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 33 0.041
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.16
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.22
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.29
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 28 1.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.7
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.1
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 33.1 bits (72), Expect = 0.041
Identities = 26/88 (29%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Frame = +1
Query: 340 PGQGQRPA-PMPIRPPAGGQFPPMTGQRPPSATGQALTAQEGFETQRXXXXXXXXXXXXX 516
P P+ P P + PA Q P P S Q+ Q
Sbjct: 429 PASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQS-AVQPSNLVPSQNAPFIP 487
Query: 517 GISGQLPP--HSKGGFPYQPIPVRPGMP 594
G S LPP + G P PIP PGMP
Sbjct: 488 GTSAPLPPTTFAPPGVPLPPIPGAPGMP 515
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.16
Identities = 34/121 (28%), Positives = 57/121 (47%)
Frame = +3
Query: 297 SYTATSWSSTTKFWTRARSTASSNAD*TTCGRTIPSNDRTETSFCNRTGTNSPRRI*NSA 476
S TATS SST T ST +++A T +N T TS +++P NS
Sbjct: 297 STTATSASSTP--LTSVNSTTTTSASSTPLSSVSSANSTTATS-----TSSTPLSSVNST 349
Query: 477 TSKSAHATYESTTGYIWSIATSF*GWFSISTYTGAARNATKSTYSWNGCSTWSSPSARSG 656
T+ SA +T ++ + + S S+++ + + ++T T + + ST S +A S
Sbjct: 350 TATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 409
Query: 657 N 659
N
Sbjct: 410 N 410
Score = 27.1 bits (57), Expect = 2.7
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Frame = +3
Query: 297 SYTATSWSSTTKFWTRARSTASSNAD*TTCGRTIPSNDRTETSFCNRTGTNSPRRI*NSA 476
S TATS SST + S S+++ T + S + T+ T + P +S
Sbjct: 364 STTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSST 423
Query: 477 TSKSAHA-TYESTTGYIWSIATSF*GWFSISTYTGAARNATKSTYSWNGCSTWSSPSARS 653
SA++ T S + S S + ST + + T ++ S ++ +S +A S
Sbjct: 424 PLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATS 483
Query: 654 GNAGPST 674
++ P T
Sbjct: 484 ASSTPLT 490
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.22
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Frame = +3
Query: 288 QYPSYTATSWSSTTKFWTRARSTASSNAD*TTCGRTI-PSNDRTETSFCNRTGTNSPRRI 464
Q PS T+ +S T+ +T + + +SS D ++ I PS+ E S + + ++S
Sbjct: 113 QLPSSTSF-FSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSS---- 167
Query: 465 *NSATSKSAHATYESTTGYIWSIATSF*GWFSISTYTGAARNATKSTY--SWNGCSTWSS 638
+ TS + + ST+ S++++ S ST++ AA +T S+Y S + S+ SS
Sbjct: 168 -DPLTSSTFSSLSSSTSSSQPSVSST-----SSSTFSSAAPTSTSSSYLSSSSVVSSSSS 221
Query: 639 PSARSGN 659
PS+ S +
Sbjct: 222 PSSSSSS 228
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.29
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Frame = +3
Query: 297 SYTATSWSSTTKFWTRARSTASSNAD*TTCGRTIP--SNDRTETSFCNRTG-TNSPRRI* 467
S +TS SST W ++ T +IP S +RT T+F + T + S
Sbjct: 606 SPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTA 665
Query: 468 NSATSKSAHAT--YESTTGYIWSIA-----TSF*GWFSISTYTGAA-----RNATK-STY 608
S+TS ++ ++ Y + T +++ TSF F+ S T ++ N+T+ T
Sbjct: 666 TSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTA 725
Query: 609 SWNGCSTWSSPSARSGNAGPSTISVKFYTNRNTSA 713
S + + + S SG++ S+ + T+ TS+
Sbjct: 726 STSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSS 760
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 399 PSNDRTETSFCNRTGTNSPRRI*NSATSKSAHATYESTTGYIWSIATSF*GWFSISTYTG 578
P++ + R+G SPR S T KS+H+ ST S+ T+ +T+T
Sbjct: 129 PASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHSP-PSTRKRRGSVGTT-------ATHTK 180
Query: 579 AARNATKST 605
++NA K++
Sbjct: 181 RSKNAPKTS 189
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/82 (25%), Positives = 43/82 (52%)
Frame = +3
Query: 468 NSATSKSAHATYESTTGYIWSIATSF*GWFSISTYTGAARNATKSTYSWNGCSTWSSPSA 647
++ T ++ +Y T SIA S G + S+Y + ++T S+ S + S+ SS S+
Sbjct: 112 STCTISTSSLSYSGTISST-SIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSS 170
Query: 648 RSGNAGPSTISVKFYTNRNTSA 713
+S ++ S+ S + ++S+
Sbjct: 171 KSSSSSKSSSSSSSSSKSSSSS 192
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 MPIRPPAGGQFPPMTGQRP-PSATGQALTAQEGFETQ 474
+P+ +G PP Q PSATGQ+ Q+ ++TQ
Sbjct: 733 VPVAQLSGNWQPPHLPQAQLPSATGQSGVVQQPYQTQ 769
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.1
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Frame = +3
Query: 297 SYTATSWSSTTKFWTRARSTASSNAD*TTCGRTIPSNDRTETSFCNRTGTNSPRRI*NSA 476
S T +S SS T T + S++SS++ ++ ++ S+ ++ + +RT ++ R +
Sbjct: 130 SSTTSSSSSATPSTTSSSSSSSSSSS-SSSSKSSSSSSKSSSRSSSRTTSH---RTTSHK 185
Query: 477 TSKSAHATYESTTGYIWSIATSF*GWFSIST----YTGA--ARNATKSTYSWNGCSTWSS 638
+S + TT ++I + G + T +T A NAT ST+ NG ++ +
Sbjct: 186 SSSYRPTVFPYTTISHYNITNATNGTYCNGTNGTNFTCIVNASNATNSTFWLNGTNSTNG 245
Query: 639 PSARSGNAGPSTISVKFYTN 698
++ + + S K T+
Sbjct: 246 TNSTNSTSTTSHSLTKLPTS 265
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +1
Query: 358 PAPMPIRPPAGG--QFPPMTGQRP 423
PAP PI PP+ G PP + RP
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRP 274
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 358 PAPMPIRPPAGGQFPPMTGQRPPSATG 438
PAP+P+ PPA P PP G
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,129
Number of Sequences: 5004
Number of extensions: 53017
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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