Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22d07
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    29   4.5  
11_01_0340 + 2534998-2535660                                           29   5.9  
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204...    29   5.9  

>02_04_0532 +
           23711530-23711755,23712984-23713093,23713204-23715298,
           23716092-23716153,23716236-23716277,23716614-23716673,
           23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 398 WEIKQFLECAQQQHDLSLCDGFNEALRQ 481
           W +KQFL+C  Q+H  +L    + A+R+
Sbjct: 408 WILKQFLDCMYQKHPRALITDGDNAMRR 435


>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 94  KPSTSASKESCSPAK*C-TSSCGSIDPGY--DSSSTSAALAIRADGCHGW 234
           KP++S+S  S S       ++C   +PG    SSS+S     RAD C  W
Sbjct: 57  KPTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSCERW 106


>05_01_0266 -
           2040555-2040722,2041248-2041349,2041461-2041958,
           2042372-2042479,2042559-2042753
          Length = 356

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 309 AASQPSNSKQLLQLKPTINTRDSRLKDHAR 398
           AAS  S   Q L L   +N +DS LK+H R
Sbjct: 136 AASAKSAQSQCLSLLKELNEKDSSLKEHER 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,168,090
Number of Sequences: 37544
Number of extensions: 346610
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)