Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c17
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    29   1.1  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   5.8  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    26   5.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   7.6  

>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 388 THQCIRPALIVQYQKTHINYHSTMLVEGMMILHPLYTN 501
           TH+ +  A I+Q  + H N  S+ LVE M +    Y N
Sbjct: 209 THKVLLDANIIQLLRQHSNPFSSTLVELMTVFQQTYEN 246


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 433 THI--NYHSTMLVEGMMILHPLYTNPLMEEEHGGV 531
           TH+    ++T+ VE  ++ HPLYT+     E GG+
Sbjct: 103 THVLQQIYTTLYVE-FVVKHPLYTHVPPSAEEGGI 136


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 332 LIASRYYCCLIRVNITRRKLMLEHLEVDRVLD 237
           ++    YC ++++NI + KL+L   EVD + D
Sbjct: 175 VVPDEQYCSIVKINIGKSKLILAG-EVDCIWD 205


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 148 ILYLCV-HHIYANLCILNRRNLWPTGLVGSQQF 53
           +L++C+ H++YAN C    + + PT  +  ++F
Sbjct: 242 VLFVCLGHYLYANACSKGEQLIVPTWDMAYEKF 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,989
Number of Sequences: 5004
Number of extensions: 74323
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)