Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22c17
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 29 3.5
02_02_0728 + 13416481-13416889,13416979-13417065,13417220-134173... 29 3.5
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 29 4.6
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 29 6.1
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697... 29 6.1
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 29 6.1
12_02_0128 - 13969118-13969222,13969329-13969460,13969558-139696... 28 8.0
07_01_0781 - 6051139-6052305 28 8.0
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 28 8.0
05_01_0387 + 3031225-3031313,3033752-3033820,3033947-3034220,303... 28 8.0
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 28 8.0
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 392 WVYIISP--WKLSSLFSSRQDLLIASRYYC 309
W I SP W++ F SR+DL++ RY C
Sbjct: 495 WHTIRSPRVWQIEQSFRSRKDLILRERYDC 524
>02_02_0728 +
13416481-13416889,13416979-13417065,13417220-13417351,
13417474-13417539,13417754-13418919
Length = 619
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 418 VQYQKTHINYHSTMLVEGMMILHPLYTNPLMEEEHG 525
++Y++ I H + L + + H ++TNPL +HG
Sbjct: 550 LRYKQYSIGVHESSLTDQYPLDHEIFTNPLSFHKHG 585
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 29.1 bits (62), Expect = 4.6
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)
Frame = +3
Query: 213 FVENHVNKIQNSVNFKMFKHQLSSRNVH---SYQTTVVPRSNQQILSAAEQRAKFPWADD 383
FVE + + + M + LS R + + QT P ++I+ A +
Sbjct: 442 FVEFAHSSDASKARYHMNRKMLSGREISVAFAVQTRKRPEEMRRIIGARHNSPQRKEECR 501
Query: 384 INPSVYQAGTDSSISENAYQLP----QYYVGGRNDDPPSPVYQSPY-----------GGG 518
N G D +Y QY GR++ PP+P + P+ G
Sbjct: 502 TNSPGQPKGHDEKRKRRSYTPKYKDRQYADIGRDETPPAPDSERPWALCRSPRPSPPGQS 561
Query: 519 TWRSYSKAQKVHMQDAYCFPQCSSA 593
RSYS++ +H+ D CS A
Sbjct: 562 HSRSYSRSHSLHLHDHARTRSCSPA 586
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 336 ILSAAEQR--AKFPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPY 509
++SAAE+ A P D PS ++ G + EN +L Y++ D PV
Sbjct: 34 VVSAAERTNVASLPGLDGALPSRFETGYVTVDEENGGELFYYFIESEGDPGADPVLLWIN 93
Query: 510 GG 515
GG
Sbjct: 94 GG 95
>07_03_0006 +
12268852-12269146,12269362-12269487,12269536-12269753,
12269918-12270292,12270376-12270610,12270698-12270861
Length = 470
Score = 28.7 bits (61), Expect = 6.1
Identities = 25/106 (23%), Positives = 45/106 (42%)
Frame = +3
Query: 198 FSSCLFVENHVNKIQNSVNFKMFKHQLSSRNVHSYQTTVVPRSNQQILSAAEQRAKFPWA 377
F S + ++ V Q + F K ++ R+V + +P+ L+ A
Sbjct: 297 FPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKLTKRYDAAHLQVL 356
Query: 378 DDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGG 515
++ S+ D I + Y+L Q+ VG +NDD P P+ + G
Sbjct: 357 V-LDHSLIPESVDVIIGDFLYEL-QFKVGPKNDDEPVPMEMDNFDG 400
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 294 HSYQTTVVPRSNQQILSAAEQRAKFPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRN 473
H Y T++ P + QQ++SA E +D + Q +S+ + + + V G N
Sbjct: 345 HIYATSMSPPAVQQVISAIEVILGEDGSDRGAKKLAQIRENSNFFRSELEKMGFEVLGDN 404
Query: 474 DDPPSPV 494
D P P+
Sbjct: 405 DSPVMPI 411
>12_02_0128 -
13969118-13969222,13969329-13969460,13969558-13969671,
13971843-13971941,13972035-13972171,13972505-13972598,
13973248-13973355,13973442-13973537,13973673-13973845,
13974818-13975172,13975308-13975442,13975524-13975667,
13975762-13976436,13976552-13976617,13976710-13976877
Length = 866
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 319 LEAINKSCRLLNKELSFHGLMI*THQCIRPALIVQYQKTHINYH-STMLVEGMMI-LHPL 492
+E ++ R + ++ +F G ++ +C V++ +H ++ S ++V G I ++P
Sbjct: 110 IEGLSNEQRTIIEKSAF-GSLLNFQRCAILLSFVKWIASHTDFSCSDIVVNGRSIPINPN 168
Query: 493 YTNPLMEEEHGGVTVKHKKFICKTHIVSH 579
TN ++ +GG+ +KH + K H
Sbjct: 169 TTNFILGIPNGGLAIKHDNDVGKHFFHQH 197
>07_01_0781 - 6051139-6052305
Length = 388
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 783 KYQSIYQLQISPAEYNNKHTQSQDNDLHKL 694
K + + + S E N+KH Q Q++D+H+L
Sbjct: 84 KEELVAMIDQSIQEINSKHGQEQESDMHRL 113
>05_04_0367 -
20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 447 PQYYVGGRNDDPPSPVYQSPYGGGTW 524
P YY + P + VYQ PYG G +
Sbjct: 181 PNYYYMKASSTPANTVYQEPYGYGNF 206
>05_01_0387 +
3031225-3031313,3033752-3033820,3033947-3034220,
3034310-3034339,3034491-3034634
Length = 201
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 681 PQGLLMVLEVPVTYSKVEHWVQDCIMAMKMLKNIVG 574
PQG+ L V SK +++V D +++LKN+ G
Sbjct: 143 PQGVSKGLAVDKKPSKAKYYVDDAGEVVRLLKNVAG 178
>02_03_0390 +
18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 386 YIISPWKLSSLFSSRQDLLIASRYYCCLIRVNITRRKLMLEHLEVDRVLDFVYMI 222
Y +S L R+DLL + + C + T+ L E D V+ YMI
Sbjct: 249 YDVSVSSSDVLLHRREDLLQRAEVHVCAFDIETTKLPLKFPDAEYDTVMMISYMI 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,374,963
Number of Sequences: 37544
Number of extensions: 459037
Number of successful extensions: 1121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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