Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c17
         (836 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-P...    29   6.0  
X95845-1|CAA65103.1|  398|Drosophila melanogaster tap protein.         29   7.9  
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    29   7.9  
M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase...    29   7.9  
BT030446-1|ABP87888.1|  373|Drosophila melanogaster IP09427p pro...    29   7.9  
BT025852-1|ABF85752.1|  373|Drosophila melanogaster IP15048p pro...    29   7.9  
AY119146-1|AAM51006.1|  398|Drosophila melanogaster RE52048p pro...    29   7.9  
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro...    29   7.9  
AF022883-1|AAC80572.1|  398|Drosophila melanogaster basic helix-...    29   7.9  
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    29   7.9  
AE014296-2893|AAF49352.1|  398|Drosophila melanogaster CG7659-PA...    29   7.9  
AE014134-2658|AAF53494.1|  272|Drosophila melanogaster CG12448-P...    29   7.9  
AE014134-2657|AAN10923.1|  393|Drosophila melanogaster CG12448-P...    29   7.9  

>AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-PB
            protein.
          Length = 4547

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 453  YYVGGRNDDPPS-PVYQSPYGGG 518
            Y+V GR DD  +  +Y +PYGGG
Sbjct: 1692 YWVQGREDDDENCTIYTTPYGGG 1714


>X95845-1|CAA65103.1|  398|Drosophila melanogaster tap protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 480 PPSPVYQSPYGGGTW 524
           PP+P    PY GGTW
Sbjct: 51  PPTPAIPQPYSGGTW 65


>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
            D.melanogaster RpII215gene encoding RNA polymerase II,
            largest subunit, completecds. ).
          Length = 1896

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 366  FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYS 536
            FP +  ++PS      + + S      P Y     N  P SP+Y SP    T  +++
Sbjct: 1571 FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFN 1627


>M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase II
           largest subunit protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 366 FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYS 536
           FP +  ++PS      + + S      P Y     N  P SP+Y SP    T  +++
Sbjct: 90  FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFN 146


>BT030446-1|ABP87888.1|  373|Drosophila melanogaster IP09427p
           protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 526 GVTVKHKKFICKTHIVSHNVLQHFHCHYTILNPMFHL*VGHRYLQYHQ*ALRCLSLELVE 705
           G  V+H KF     ++   ++Q+ H   T +  +F   +  +Y Q  Q  ++ L ++ VE
Sbjct: 120 GFWVRHSKFSFMQQLLQQRIIQYHHDMATKIQALFRGWMTRQYFQDFQ-GMKSLRIQYVE 178

Query: 706 VIVLAL 723
            ++ +L
Sbjct: 179 DMLSSL 184


>BT025852-1|ABF85752.1|  373|Drosophila melanogaster IP15048p
           protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 526 GVTVKHKKFICKTHIVSHNVLQHFHCHYTILNPMFHL*VGHRYLQYHQ*ALRCLSLELVE 705
           G  V+H KF     ++   ++Q+ H   T +  +F   +  +Y Q  Q  ++ L ++ VE
Sbjct: 120 GFWVRHSKFSFMQQLLQQRIIQYHHDMATKIQALFRGWMTRQYFQDFQ-GMKSLRIQYVE 178

Query: 706 VIVLAL 723
            ++ +L
Sbjct: 179 DMLSSL 184


>AY119146-1|AAM51006.1|  398|Drosophila melanogaster RE52048p
           protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 480 PPSPVYQSPYGGGTW 524
           PP+P    PY GGTW
Sbjct: 51  PPTPAIPQPYSGGTW 65


>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
          Length = 1429

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 366  FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYS 536
            FP +  ++PS      + + S      P Y     N  P SP+Y SP    T  +++
Sbjct: 1111 FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFN 1167


>AF022883-1|AAC80572.1|  398|Drosophila melanogaster basic
           helix-loop-helix neuraltranscription factor BIPAROUS
           protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 480 PPSPVYQSPYGGGTW 524
           PP+P    PY GGTW
Sbjct: 51  PPTPAIPQPYSGGTW 65


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
            protein.
          Length = 1887

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 366  FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYS 536
            FP +  ++PS      + + S      P Y     N  P SP+Y SP    T  +++
Sbjct: 1569 FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFN 1625


>AE014296-2893|AAF49352.1|  398|Drosophila melanogaster CG7659-PA
           protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 480 PPSPVYQSPYGGGTW 524
           PP+P    PY GGTW
Sbjct: 51  PPTPAIPQPYSGGTW 65


>AE014134-2658|AAF53494.1|  272|Drosophila melanogaster CG12448-PA,
           isoform A protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 526 GVTVKHKKFICKTHIVSHNVLQHFHCHYTILNPMFHL*VGHRYLQYHQ*ALRCLSLELVE 705
           G  V+H KF     ++   ++Q+ H   T +  +F   +  +Y Q  Q  ++ L ++ VE
Sbjct: 81  GFWVRHSKFSFMQQLLQQRIIQYHHDMATKIQALFRGWMTRQYFQDFQ-GMKSLRIQYVE 139

Query: 706 VIVLAL 723
            ++ +L
Sbjct: 140 DMLSSL 145


>AE014134-2657|AAN10923.1|  393|Drosophila melanogaster CG12448-PB,
           isoform B protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 526 GVTVKHKKFICKTHIVSHNVLQHFHCHYTILNPMFHL*VGHRYLQYHQ*ALRCLSLELVE 705
           G  V+H KF     ++   ++Q+ H   T +  +F   +  +Y Q  Q  ++ L ++ VE
Sbjct: 99  GFWVRHSKFSFMQQLLQQRIIQYHHDMATKIQALFRGWMTRQYFQDFQ-GMKSLRIQYVE 157

Query: 706 VIVLAL 723
            ++ +L
Sbjct: 158 DMLSSL 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,697,498
Number of Sequences: 53049
Number of extensions: 826702
Number of successful extensions: 2487
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2487
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)