Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22c17
(836 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 31 1.0
Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical pr... 29 3.1
U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine rece... 29 3.1
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 28 7.2
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 28 7.2
AF067942-5|AAG45580.2| 345|Caenorhabditis elegans Hypothetical ... 28 7.2
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 483 PSPVYQSPYGGGTWRSYSKA--QKVHMQDAYCFPQCSSAFSLPL 608
PSP +Q+PYGGG+ S S + A P+ S F+ P+
Sbjct: 611 PSPQFQAPYGGGSLPSISASWLHSASTSAAAAAPERSEMFTSPI 654
>Z68118-5|CAA92185.1| 245|Caenorhabditis elegans Hypothetical
protein R01E6.5 protein.
Length = 245
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 399 YQAGTDS-SISENAYQ-LPQYYVGGRNDDPPSPVYQSPYGGGTWRSY 533
Y G DS S + YQ P+YY G ++ PS + SPY G + Y
Sbjct: 194 YGQGHDSESYQPSYYQPKPKYYGGHQSHYQPSARHSSPYQGDQYYGY 240
>U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 9 protein.
Length = 341
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 196 LCYFGHE*LIIQSFEYILYLCVHHIYANLCILNRRN 89
LC+FGH L S+ +L+L +H +++ L RN
Sbjct: 79 LCHFGHPFLCYASWSALLHLFIHSMWSLLLSFAYRN 114
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 KHQLSSRNVHSYQTTVVPRSNQQILSAAEQRAKFPWADDINP-SVYQAGTDSSISENAYQ 443
KHQ + + Y +V N+ I+SA + F W D + S++ + S+S+ +++
Sbjct: 62 KHQSALDVLTRYYDQLVAIENKIIISATQNPVVFKWKDAFDKGSLFSSRASLSLSDGSFE 121
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 KHQLSSRNVHSYQTTVVPRSNQQILSAAEQRAKFPWADDINP-SVYQAGTDSSISENAYQ 443
KHQ + + Y +V N+ I+SA + F W D + S++ + S+S+ +++
Sbjct: 62 KHQSALDVLTRYYDQLVAIENKIIISATQNPVVFKWKDAFDKGSLFSSRASLSLSDGSFE 121
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 KHQLSSRNVHSYQTTVVPRSNQQILSAAEQRAKFPWADDINP-SVYQAGTDSSISENAYQ 443
KHQ + + Y +V N+ I+SA + F W D + S++ + S+S+ +++
Sbjct: 62 KHQSALDVLTRYYDQLVAIENKIIISATQNPVVFKWKDAFDKGSLFSSRASLSLSDGSFE 121
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 KHQLSSRNVHSYQTTVVPRSNQQILSAAEQRAKFPWADDINP-SVYQAGTDSSISENAYQ 443
KHQ + + Y +V N+ I+SA + F W D + S++ + S+S+ +++
Sbjct: 62 KHQSALDVLTRYYDQLVAIENKIIISATQNPVVFKWKDAFDKGSLFSSRASLSLSDGSFE 121
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 KHQLSSRNVHSYQTTVVPRSNQQILSAAEQRAKFPWADDINP-SVYQAGTDSSISENAYQ 443
KHQ + + Y +V N+ I+SA + F W D + S++ + S+S+ +++
Sbjct: 62 KHQSALDVLTRYYDQLVAIENKIIISATQNPVVFKWKDAFDKGSLFSSRASLSLSDGSFE 121
>AF067942-5|AAG45580.2| 345|Caenorhabditis elegans Hypothetical
protein ZK6.5 protein.
Length = 345
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +3
Query: 174 YSWPK*HSFSSCLFVENHVNKIQNSVNFKMFKHQLSSRNVHSYQTTVVPRSNQQILSAAE 353
Y+W +F CL + + K + VN F+ Q + + TV+ S Q +S +
Sbjct: 144 YNW----AFHCCLVTVDFMKKF-SFVNLLRFEDQKNLMKEFYIKLTVLINSKQS-MSCGK 197
Query: 354 QRAKFPWADDINPSVYQAGTDSSISEN 434
+ FP D+ P S IS+N
Sbjct: 198 EGMTFPDGSDVLPPTSSEWGISKISQN 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,685
Number of Sequences: 27780
Number of extensions: 422343
Number of successful extensions: 1242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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