Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c14
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.4  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    28   1.4  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   4.3  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   7.6  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.6  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   7.6  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   7.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   7.6  

>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 509 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 408
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 642 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 785
           IFR   + R    V     AFI N++ PLV   T++TN     V +TN  S
Sbjct: 93  IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -3

Query: 622 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 443
           + R+LSIA +LLS + + R+    +    +  N+  S V   +    T SV V+  L + 
Sbjct: 14  LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69

Query: 442 RFIFIHLSTTF 410
           R+ +     T+
Sbjct: 70  RYYYEQEDVTY 80


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 791 GNACVISFSDHKLHFVSKISNK 726
           G+AC +S  + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 794 SGNACVISFSDHKLHFVSKISNKW 723
           SGN   +S  D+K++   +  NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
 Frame = +3

Query: 486 SDEKIQKTYELAEFDLKNLSSLESYETL-----KIKLALSKYMAMLSTLEMTQPLLEIFR 650
           ++  I+  + L    L++L+ L+S   L      + L +++     S + +   +LEI  
Sbjct: 239 NENTIEDFFGLVRARLESLNLLDSDSELLCEFPDLSLKINEDNVYASQIHLVD-ILEILT 297

Query: 651 NKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTEN 818
              D  +  ++VFST      R++ LV   ++     + E  D       IL   N
Sbjct: 298 VHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRN 353


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 189 NSKHVFDHFGCSSNYCFNNYV 251
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 755 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 591
           L +++ +S+ KW+E +  K  C K+   N  S     K F + +G+   A +   +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 772  VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 644
            +S+ TNS L VKL ++   + C+ +  + ++ ++  ++ L L+
Sbjct: 905  ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,298
Number of Sequences: 5004
Number of extensions: 57981
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)