Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c12
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   341   3e-94
U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family ...    29   2.7  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  341 bits (839), Expect = 3e-94
 Identities = 165/194 (85%), Positives = 177/194 (91%), Gaps = 1/194 (0%)
 Frame = +3

Query: 144 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 323
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 324 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 503
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 504 AGTVRRQAVDVSPLRRVNQA-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAI 680
           AGTVRRQAVDV+PLRRVNQA WLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAI
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAI 196

Query: 681 KKKDELERVAKSNR 722
           KKKDELERVAKSNR
Sbjct: 197 KKKDELERVAKSNR 210


>U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform c protein.
          Length = 181

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -3

Query: 656 LSCIN*FICNTLCDCFNISECSLTCTCAQKPGLVDSAQG*NINGLTTNCTRTTDPSRIFT 477
           +SC   ++CN L D   ++       C Q  G     +G    GL   C  TTD    F 
Sbjct: 101 VSCFKTYMCNKLLDSCTVAPHEAELYCKQCHGRKFGPKGVGF-GLGAGCL-TTDSGEKFG 158

Query: 476 GSRVDN 459
           GS+  N
Sbjct: 159 GSKQTN 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,530,000
Number of Sequences: 27780
Number of extensions: 373611
Number of successful extensions: 995
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)