Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c11
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    29   0.58 
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    28   1.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   2.4  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    27   2.4  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   7.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   7.2  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    26   7.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   7.2  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   7.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   9.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 73  KSAAYDPLKAPNYF--EEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDSA 234
           + A Y  L+APN+F  ++  H     + +  E  RR   F  +L E I K  +  A
Sbjct: 667 EKAGYHTLRAPNFFYSQQVKHYKQDLFPANSEAARRISFFAQSLAESIPKTSSIDA 722


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 16  LCKKKMNKILFYLFVYAVVK-SAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQH 192
           L K K+ K+L+ +FV++ +      DP  A  +FE F       +  ++  L + KI   
Sbjct: 77  LYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVLHGYDIRALAQLKI-AS 135

Query: 193 NLNEIINKNQNDSAKYEIN 249
           ++ EI         KY IN
Sbjct: 136 DVEEIEIAQLYRKNKYRIN 154


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
 Frame = +1

Query: 208  INKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILL-DQPPGKGPLEFDW 384
            I+ +     +Y +    DL +DE + +  GL         C  +L  D    K  L  + 
Sbjct: 1973 IHGSDGKDYQYVLKGHEDLRQDERVMQLFGL---------CNTLLTTDSETFKRRLNIE- 2022

Query: 385  RRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMI----DCD 534
             R   +    N G+ G      TL  L  +F  K N L+NL  + M+    DCD
Sbjct: 2023 -RYTVIPLSPNSGLLGWVPHSDTLHFLIKEFRSKRNILLNLEHRMMLQMAPDCD 2075


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +1

Query: 16  LCKKKMNKILFYLFVYAVVKSAAYDPLK-APNYFEEFVHRFNKNYSSEVEKLRRFKIFQH 192
           L K ++++ILF +FV++ +   + D  + A  ++E F       +  +V+ L+   +  H
Sbjct: 74  LYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLHDFDVKNLKSLSLPSH 133

Query: 193 NLNEIINKNQNDSAKYEINKFSDLSKD 273
            + E     Q    KY+++ FS ++ D
Sbjct: 134 -VAEDRTAQQYRQNKYQLH-FSRITFD 158


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +1

Query: 658 NSNKFLVQVKDCYRYIIVYEEKLKDLLR 741
           N+N +   +KDC+R ++    K+K++++
Sbjct: 198 NNNDWSSLMKDCFRDVVNNNRKMKEIIK 225


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +1

Query: 196 LNEIINKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQP 354
           L++++ K +    + E++    +S D+ I +   + LP+   N  K    D+P
Sbjct: 294 LSDLVEKQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSALNNISKPESTDRP 346


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 222 LVFIDNFI*IVLENFESSQFFNFATIIFVESMNKFFKIIRRFQRIVG 82
           +V + N   I  E  E +    F    F+ESMN+ FK I   +++VG
Sbjct: 54  VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVG 100


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 273  VFGQIREFVYFIFGRIVLVFIDNF 202
            +FG I +FVY+ +   VLV  DNF
Sbjct: 1027 IFGVIGKFVYWAYVAPVLVSPDNF 1050


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 91  PLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIIN 213
           P K  +YF +      KN SS+++      ++Q   NE+ N
Sbjct: 323 PSKIQDYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKN 363


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 428 HIP*FFTLVTLLRRRQSNSRGPLPGGWSKSMT 333
           H+   + L   +R++ +  +GPLP GW   ++
Sbjct: 222 HLLEHYPLALSVRQQVAVEKGPLPAGWEMRLS 253


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/88 (21%), Positives = 37/88 (42%)
 Frame = +1

Query: 70   VKSAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDSAKYEIN 249
            +K A  D LK  N   + +  +NK  +   EK++  +  +  L + +   +++   Y+ N
Sbjct: 933  LKLALQDELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNN 992

Query: 250  KFSDLSKDETIAKYTGLSLPTQTQNFCK 333
               D ++ E   K     L     +F K
Sbjct: 993  LVQDKNELEERLKEIQKELEVYNNHFMK 1020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,949
Number of Sequences: 5004
Number of extensions: 65070
Number of successful extensions: 225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)