Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22c06
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221... 32 0.42
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 30 2.2
02_01_0405 - 2952434-2955583 29 2.9
02_01_0243 - 1601977-1602834,1602857-1603063 29 3.9
10_08_0631 - 19435796-19436452,19437237-19438130 29 5.2
03_05_1070 + 30125131-30127029 28 6.8
02_01_0406 - 2958933-2962076 28 6.8
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 28 6.8
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 28 9.0
>11_01_0295 +
2217496-2218092,2218774-2218876,2219140-2219249,
2219328-2219399,2219653-2219814,2220300-2220510,
2220613-2220948,2221050-2221162
Length = 567
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 610 PADLHDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQE 494
PADL D + G G+H P ST+ G + A + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 519 LFLPPAATVSVEGGD--ACAPEYPGTASCKSAGVCSSA 626
L +PP +V GD + A + P ASC++AG C++A
Sbjct: 99 LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136
>02_01_0405 - 2952434-2955583
Length = 1049
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = +3
Query: 411 CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAPEYPGT 590
C +H+ I L L + N +L+ SCTE+ L +S +GG A A GT
Sbjct: 8 CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66
Query: 591 ASCKSAGVCSSAGQQMDGVT 650
CK G+ S + V+
Sbjct: 67 DCCKWDGITCSQDSTVTDVS 86
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +3
Query: 495 SCTERHAHLFLPPA-ATVSVEG---GDAC--APEYPGTASCKSAGVCSSAGQQMDGVTNR 656
S + ++++F P A AT V G G C A P TASC S+G ++A R
Sbjct: 59 SSSSPYSYVFTPSATATTRVAGYCCGATCASASAAPATASCCSSGTRAAAATAACSSATR 118
Query: 657 IIGALQVLSKL*QWRRLLSDLF 722
G+ + + W+RL F
Sbjct: 119 RRGSWSICRR---WKRLRPSAF 137
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 722 EQIRQKAPPLSKFR*HLQCSNNPVRHAVHLLTSTATHTRRFA*RCSRVLRC 570
++I+ A PLSK R HL CSN P + + T T + R +V++C
Sbjct: 466 DEIQVSASPLSK-RWHLVCSNIPNNISYLVSTFTLANCRTTDIGTKKVMQC 515
>03_05_1070 + 30125131-30127029
Length = 632
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 538 AAGGKNKCAWRSVQECDS-VLRLD 470
A GG+ + AWRS DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 28.3 bits (60), Expect = 6.8
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEGGDACAPEYPGTAS 596
+H+ I L L + N +L+ SCTE+ L +S +GG A GT
Sbjct: 8 KHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLKFIRELSQDGG-LSASWQDGTDC 66
Query: 597 CKSAGV-CSSAGQQMD 641
CK G+ CS G D
Sbjct: 67 CKWDGIACSQDGTVTD 82
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
L+H TR+++ L PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172
>01_07_0238 +
42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 357 KTIHLRRRMSPGIVPWNRCLEHNYTREIVRLMTTL 461
K + L+ + GI+PW+ +H++ ++V +M L
Sbjct: 890 KLLELQADIMSGILPWSSVTKHHFKGKVVLIMEIL 924
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,224,638
Number of Sequences: 37544
Number of extensions: 426889
Number of successful extensions: 1344
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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