Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c06
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-dom...    28   6.1  
AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted 2-im...    28   6.1  

>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 616 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNKCAWRSVQE 494
           + P   ++ VP Y       P TE+    G +   W SV+E
Sbjct: 25  YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65


>U29487-1|AAA68768.1|  253|Caenorhabditis elegans 2 (zwei) ig-domain
           protein protein4 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 438 IVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEG 557
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEG 149


>AF456251-1|AAL59609.1|  253|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-4 protein.
          Length = 253

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 438 IVRLMTTLPVPSNRNTLSHSCTERHAHLFLPPAATVSVEG 557
           IV  + T+  PS  N+ ++SC   + H  +   A V +EG
Sbjct: 110 IVASILTIQCPSAENSGTYSCVGYNGHQTIETVAEVEIEG 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,471
Number of Sequences: 27780
Number of extensions: 369028
Number of successful extensions: 1001
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)