Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22c05
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 30 2.4
11_06_0264 - 21785450-21786928 29 3.2
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 29 4.2
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419... 29 4.2
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24... 29 5.6
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 5.6
05_01_0131 + 888247-888771,889092-889154 29 5.6
12_01_0264 - 1929022-1930212 28 9.8
11_01_0266 - 2010572-2011879 28 9.8
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861... 28 9.8
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/91 (27%), Positives = 38/91 (41%)
Frame = +2
Query: 518 VDGLAPKAIENEVESIDGVDKGSGGGVRLKKELSLMNXXXXXXXXXXXXXXFVSPSLALK 697
+ GL A+ + S SG G L ++L + FV +
Sbjct: 21 LSGLCAAALRRKPISAHAAHAASGEG--LVRQLGVFELVLLGIGASIGAGIFVVTGTVAR 78
Query: 698 HAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
AG G+ I +VL+G ++ ALCYAEL +
Sbjct: 79 DAGP-GVT-ISFVLAGAACVLNALCYAELAS 107
>11_06_0264 - 21785450-21786928
Length = 492
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 600 RTPPPDPLSTPSMLSTSFSIA 538
RTPPP PL+T + +T+ S+A
Sbjct: 382 RTPPPPPLATAASTATAISVA 402
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 557 ESIDGVDKGSGGGVRLKKELSLMNXXXXXXXXXXXXXXFVSP-SLALKHAGSKGMALIVW 733
+ +D + GG +L KELS+ +V ++A +HAG + +
Sbjct: 8 KQVDSDRVRAAGGHQLAKELSVTQLVAIGVGSTIGAGVYVLVGTVAREHAGPA--LTLSF 65
Query: 734 VLSGFLSMIGALCYAELGT 790
+++G + + A CYAEL +
Sbjct: 66 LIAGVAAALSAFCYAELAS 84
>05_01_0502 +
4191443-4191769,4191770-4191892,4194161-4194313,
4194420-4194505,4194648-4194732,4194871-4194990,
4195066-4195134,4195351-4195506
Length = 372
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 237 CIYSRYNNYV*HMLV*NRFFFVSNITLSQLVNTNTESVFNS 115
C Y + +V +L+ + FFFVSN+ ++ LV + V S
Sbjct: 73 CTYIFFPQFVNFLLLLDMFFFVSNLFMADLVGIHGLQVLKS 113
>12_01_0028 +
242016-242467,242547-242918,243027-243182,245007-245089,
245159-245222,245704-246001,246616-246726,247059-247100
Length = 525
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 597 TPPPDPLSTPSMLSTSFSI--ALGANPSTSATLAIF 496
+PPP P STP S+S S+ AL +P T+ A F
Sbjct: 16 SPPPPPPSTPPPASSSRSLLSALRRSPVTTLVAAFF 51
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 262 GEVRPQISTHGLFMVYTTTRGASRRNSIRSVTQYLYDLPHDFRPQFQHY 408
G+ PQ S+ M+YTT + +Q LYD +R F+ Y
Sbjct: 31 GKPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYD---KYRESFEEY 76
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 594 PPPDPLSTPSMLSTSFSIALGANPSTS 514
PPP P STP+ S + G +P TS
Sbjct: 80 PPPPPPSTPTQFSVLRKVPTGPDPITS 106
>12_01_0264 - 1929022-1930212
Length = 396
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 263 AKSGRKYQLMGCSWCTLLH 319
A +GR Y L GCSW L H
Sbjct: 167 ATAGRGYHLEGCSWIKLPH 185
>11_01_0266 - 2010572-2011879
Length = 435
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 263 AKSGRKYQLMGCSWCTLLH 319
A +GR Y L GCSW L H
Sbjct: 230 ATAGRGYHLEGCSWIKLPH 248
>07_03_0207 -
15183894-15184685,15184993-15185078,15186042-15186144,
15186890-15186971,15187112-15187203,15187295-15187383,
15187467-15187547,15188610-15188724,15188894-15188935
Length = 493
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 631 CGNNCGCNSRIRNIRFSKFGAKTCR 705
CG+ GC S +++I K+G CR
Sbjct: 457 CGHMAGCMSCLKDIESKKWGCPICR 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,220,115
Number of Sequences: 37544
Number of extensions: 429393
Number of successful extensions: 1259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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