Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22c05
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid tran... 65 6e-11
Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical pr... 62 4e-10
AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid tr... 59 4e-09
Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical pr... 51 8e-07
AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical ... 51 8e-07
AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical ... 51 8e-07
AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid tr... 50 1e-06
U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid tran... 50 3e-06
AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid tr... 48 6e-06
AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid tr... 48 6e-06
AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid tr... 48 6e-06
U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid tran... 48 8e-06
AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical ... 31 0.94
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 31 1.2
AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical ... 29 2.9
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 28 6.7
AC006603-7|ABB51201.1| 576|Caenorhabditis elegans Hypothetical ... 28 6.7
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 28 8.8
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 28 8.8
>U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid
transporter protein 2 protein.
Length = 483
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/65 (46%), Positives = 40/65 (61%)
Frame = +2
Query: 596 VRLKKELSLMNXXXXXXXXXXXXXXFVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCY 775
++LK +SL N FVSP L AGS GM+L++W+LSG +MIGA+CY
Sbjct: 13 IKLKPRISLFNGCTIIIGVIIGSGIFVSPKGVLLEAGSAGMSLLIWLLSGVFAMIGAVCY 72
Query: 776 AELGT 790
+ELGT
Sbjct: 73 SELGT 77
>Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical
protein F27C8.1 protein.
Length = 493
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/68 (45%), Positives = 40/68 (58%)
Frame = +2
Query: 587 GGGVRLKKELSLMNXXXXXXXXXXXXXXFVSPSLALKHAGSKGMALIVWVLSGFLSMIGA 766
G G L+K L+L N FVSP+ + AGS G++LIVW++SG + IGA
Sbjct: 23 GKGKGLEKSLTLFNGVSMIVGCIIGSGIFVSPTGVQEQAGSVGLSLIVWLISGIFTAIGA 82
Query: 767 LCYAELGT 790
CYAELGT
Sbjct: 83 YCYAELGT 90
>AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid
transporter protein 3 protein.
Length = 493
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/67 (44%), Positives = 38/67 (56%)
Frame = +2
Query: 590 GGVRLKKELSLMNXXXXXXXXXXXXXXFVSPSLALKHAGSKGMALIVWVLSGFLSMIGAL 769
G L+K ++L N F+SP+ AGS G++LIVWVLSG + IGA
Sbjct: 24 GDKGLEKTMTLFNGVSIIVGCIIGSGIFISPTGIQAQAGSVGLSLIVWVLSGLFAGIGAF 83
Query: 770 CYAELGT 790
CYAELGT
Sbjct: 84 CYAELGT 90
>Z74042-3|CAA98529.2| 523|Caenorhabditis elegans Hypothetical
protein T11F9.4 protein.
Length = 523
Score = 51.2 bits (117), Expect = 8e-07
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P+ +++ S G++L +W+L+ F+SM+G+ CY ELGT
Sbjct: 39 FITPTSIIENVNSVGLSLAIWILAAFISMLGSFCYVELGT 78
>AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical
protein Y53H1C.1b protein.
Length = 527
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P LK A + GMAL+VW+ G +S+IG +CY ELGT
Sbjct: 39 FITPGTVLKLALTNGMALVVWLGCGLISLIGGICYIELGT 78
>AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical
protein Y53H1C.1a protein.
Length = 541
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P LK A + GMAL+VW+ G +S+IG +CY ELGT
Sbjct: 39 FITPGTVLKLALTNGMALVVWLGCGLISLIGGICYIELGT 78
>AF040647-7|AAB94996.2| 506|Caenorhabditis elegans Amino acid
transporter protein 7 protein.
Length = 506
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F+SP+ L HAGS G++L +W L +S+ GAL Y ELGT
Sbjct: 33 FISPTSILNHAGSVGLSLCLWALCACISLFGALSYVELGT 72
>U56963-7|AAQ01523.1| 526|Caenorhabditis elegans Amino acid
transporter protein 4 protein.
Length = 526
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P L++ S G+AL+VW+ G +S+IG +CY ELGT
Sbjct: 39 FITPGPILQYTFSNGLALLVWIGCGLISLIGGICYIELGT 78
>AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid
transporter protein5, isoform c protein.
Length = 278
Score = 48.4 bits (110), Expect = 6e-06
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P+ L++ S G++L++WVL ++++GA+CY ELGT
Sbjct: 26 FITPASILRNVDSIGLSLLIWVLCAVIAILGAICYIELGT 65
>AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid
transporter protein5, isoform b protein.
Length = 521
Score = 48.4 bits (110), Expect = 6e-06
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P+ L++ S G++L++WVL ++++GA+CY ELGT
Sbjct: 26 FITPASILRNVDSIGLSLLIWVLCAVIAILGAICYIELGT 65
>AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid
transporter protein5, isoform a protein.
Length = 537
Score = 48.4 bits (110), Expect = 6e-06
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P+ L++ S G++L++WVL ++++GA+CY ELGT
Sbjct: 26 FITPASILRNVDSIGLSLLIWVLCAVIAILGAICYIELGT 65
>U70850-4|AAB09125.3| 483|Caenorhabditis elegans Amino acid
transporter protein 8 protein.
Length = 483
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +2
Query: 671 FVSPSLALKHAGSKGMALIVWVLSGFLSMIGALCYAELGT 790
F++P ++HAGS G++LI+WV L+MI A+ Y ELGT
Sbjct: 28 FIAPKGIVEHAGSVGLSLIIWVFCALLNMITAINYIELGT 67
>AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical
protein C50D2.2 protein.
Length = 589
Score = 31.1 bits (67), Expect = 0.94
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 722 LIVWVLSGFLSMIGALCYAELG 787
++ ++L+GF S++ ALCYAE G
Sbjct: 64 ILSFLLAGFASLLSALCYAEFG 85
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -1
Query: 609 FFNRTPPPDPLSTPSMLSTS---FSIALGANPSTSATLAIFNSF 487
+F + PPP P S+ S + + F + LGA PST+++ +++
Sbjct: 331 YFFQAPPPAPASSSSTVPPAVSPFGVPLGAQPSTTSSTTYSSNY 374
>AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical
protein C04F5.9 protein.
Length = 534
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 362 ICMTCHMIFGHSSSITTVLHSECVKIKFA 448
+C C +F SSS+T + C K+K A
Sbjct: 35 LCGLCDTLFNRSSSLTNHWRNSCAKVKMA 63
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 625 ERCGNNCGCNSRIR-NIRFSKFGAKTCR 705
ERC NC C R+ + FSKF K R
Sbjct: 464 ERCEPNCRCGMRLAGKLHFSKFSKKQFR 491
>AC006603-7|ABB51201.1| 576|Caenorhabditis elegans Hypothetical
protein B0524.7 protein.
Length = 576
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 423 LCKTVVMLELWPKIMWQVIQILRHAAD 343
L K + +LW WQ+ QILR AAD
Sbjct: 51 LTKRQKLAKLWKPPTWQIRQILRAAAD 77
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 594 PPPDPLSTPSMLSTSFSIAL 535
PPP ++TPS+L+T+FS L
Sbjct: 307 PPPMHMTTPSVLTTNFSTPL 326
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 594 PPPDPLSTPSMLSTSFSIAL 535
PPP ++TPS+L+T+FS L
Sbjct: 307 PPPMHMTTPSVLTTNFSTPL 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,436
Number of Sequences: 27780
Number of extensions: 394198
Number of successful extensions: 1060
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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