Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c02
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   2.4  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   5.5  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    26   5.5  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.3  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   7.3  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.3  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   9.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +3

Query: 24  KEN*KVTIVYLPFTTM---NMQQREEKQLEATIVAILNRVNDLKTAIQALINKLETEYET 194
           +EN +  I+Y P +T    N ++ E  +L+  + A+  R ++ +  ++AL + L ++ ++
Sbjct: 49  QENERYPILYTPLSTSDHDNDEENEINELKNAVKALDKRFDNFELKLEALFSLLRSQQDS 108


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 729 VVEPGLELVPFQLPLDQPY 673
           + E  +ELVPFQL LD  Y
Sbjct: 101 IKENNIELVPFQLTLDYDY 119


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 735 PAPSTLPKAPSAIKTNIKAANXIHP 809
           P PST P  P  I T+ K    ++P
Sbjct: 11  PVPSTKPSQPCKIGTDFKGERIVYP 35


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 228 ILSGHLTGLSKILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGR-VPACTHDL 389
           ILSG ++ L K+   E AAS+ S+ V+      E +E  A L +   VP+ ++ L
Sbjct: 92  ILSGRISELLKVSPFELAASVTSQDVVEADSLVEENELQAWLEKQELVPSSSNFL 146


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 585 GMQPTHNIADTHALVTAVGTGKGLRPGMANM 677
           G  P HNI   H L  +V  G    P + N+
Sbjct: 140 GQDPYHNIGQAHGLCFSVRPGIPCPPSLVNI 170


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 578 SH*LSFPVFAAFGYNFPNVTDNFSELSNVFLCCIIA 471
           SH L       F Y  P +  NF+ L   F+ C+IA
Sbjct: 25  SHKLWVSSLNKFQYTLPLLISNFAGLGIAFIYCLIA 60


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 315 QLSCERDET--LAH-LTEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTL 470
           Q SC R  T  L H +    +    H L  D+L  +  P  E ++ +F HKA  L
Sbjct: 257 QRSCYRTYTTELTHEIVRKNLAFAPHMLAGDILSPRYCPSLEAKVTRFPHKARHL 311


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 135 NDLKTAIQALINKLETEYETINWP-TFLDNYAILSGHLTGLSKILQAEQAASL 290
           +D++    +   + E E    ++P TF+   A  S H T  +K++ A+++A L
Sbjct: 79  DDIENEASSFSEQSENENYDFSYPGTFVYRKAASSSHETLATKVVSADESARL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,901
Number of Sequences: 5004
Number of extensions: 54731
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)