Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c02
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical ...    88   6e-18
AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical ...    88   6e-18
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    33   0.24 
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    30   2.3  

>AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1b protein.
          Length = 297

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 8/209 (3%)
 Frame = +3

Query: 57  PFTTMNMQQREEKQLEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNYAILS 236
           P  T N Q   EK  +AT + I  RV D K  I+ L+  L+ + E   WP  L+ ++ L+
Sbjct: 8   PPVTSNYQGEPEKIAQATDMMI-KRVTDAKKIIEELLQMLDLQ-EKCPWPLMLEKFSTLA 65

Query: 237 GHLTGLSKILQA--------EQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLV 392
             ++ L   ++         +    LRS +++  +L  E DETL   T+GRV +  H LV
Sbjct: 66  SFMSSLQSSVRKSGMPHGHEDYGQFLRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALV 125

Query: 393 PDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGES 572
           P+ LRTKP P+ E      + + S  S D   + IA + K +    E +       +   
Sbjct: 126 PEYLRTKPNPEMENEEGMLDGERSAKSADLVVRQIAAYNKNI----EGLINHLNSVDRMH 181

Query: 573 MRSTGMQPTHNIADTHALVTAVGTGKGLR 659
             +   +PT+N  +T  +V ++ TG+G+R
Sbjct: 182 TEAAIEKPTYNRDETAKIVKSILTGEGIR 210


>AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1a protein.
          Length = 325

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 8/209 (3%)
 Frame = +3

Query: 57  PFTTMNMQQREEKQLEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNYAILS 236
           P  T N Q   EK  +AT + I  RV D K  I+ L+  L+ + E   WP  L+ ++ L+
Sbjct: 8   PPVTSNYQGEPEKIAQATDMMI-KRVTDAKKIIEELLQMLDLQ-EKCPWPLMLEKFSTLA 65

Query: 237 GHLTGLSKILQA--------EQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLV 392
             ++ L   ++         +    LRS +++  +L  E DETL   T+GRV +  H LV
Sbjct: 66  SFMSSLQSSVRKSGMPHGHEDYGQFLRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALV 125

Query: 393 PDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGES 572
           P+ LRTKP P+ E      + + S  S D   + IA + K +    E +       +   
Sbjct: 126 PEYLRTKPNPEMENEEGMLDGERSAKSADLVVRQIAAYNKNI----EGLINHLNSVDRMH 181

Query: 573 MRSTGMQPTHNIADTHALVTAVGTGKGLR 659
             +   +PT+N  +T  +V ++ TG+G+R
Sbjct: 182 TEAAIEKPTYNRDETAKIVKSILTGEGIR 210


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 129  RVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHL 245
            +++DL+  I+++  +++T  E I W  F   YA+L+ H+
Sbjct: 1976 QISDLRQNIKSMNREIQTALEHIGWRAFYPAYAVLARHI 2014


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 129  RVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHL 245
            +++DL+  I+++  +++T  E I W  F   YA+L+ H+
Sbjct: 1993 QISDLRQNIKSMNREIQTALEHIGWRAFYPAYAVLARHI 2031


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 129  RVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHL 245
            +++DL+  I+++  +++T  E I W  F   YA+L+ H+
Sbjct: 1976 QISDLRQNIKSMNREIQTALEHIGWRAFYPAYAVLARHI 2014


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 327 ERDETLAHLTEGRVPACTHDLVPDLL 404
           E+D  + H  EG V  C H+++ D+L
Sbjct: 395 EKDTKICHKNEGSVATCVHEILSDVL 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,144,434
Number of Sequences: 27780
Number of extensions: 305228
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)