Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c02
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.089
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.089
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 432 QRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIA 611
           Q+ QQ +H+ S+  + + Q+    F+ +  H  +    GR+  E    +       + I 
Sbjct: 100 QQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQ 159

Query: 612 DTHALVTA 635
            TH L TA
Sbjct: 160 QTHLLQTA 167


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 199 FIVSYSVSSLFINACIAVFKSFTLFK 122
           FI+  S+SS +I   I VF  + +FK
Sbjct: 343 FIIYSSLSSFYIPCIIMVFLYYNIFK 368


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 582 TGMQPTHNIADTHALVTAVGTGKGLRPGMA 671
           TG+   H +   H L ++  TG    PG A
Sbjct: 132 TGLHGLHGLHGLHGLSSSAPTGSSCGPGAA 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,023
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)