Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22c01
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual 153 2e-38
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 28 1.2
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 2.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 5.0
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 26 6.6
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 25 8.8
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.8
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 8.8
>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 198
Score = 153 bits (372), Expect = 2e-38
Identities = 82/173 (47%), Positives = 113/173 (65%), Gaps = 6/173 (3%)
Frame = +2
Query: 248 ILEFLELVGRLKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDRIKCLQ 427
I+ FL+ + RLK RTGW+ I E+IA HMYRMGI+T L N+P+ +++ +CL+
Sbjct: 9 IVPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLC---NDPS-INKERCLK 64
Query: 428 IALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGL-----TGIAGDRMYELYKEY 592
IA++HD+AE IVGD+TPH VS EEKHR E EAM +I+ + + + EL+ EY
Sbjct: 65 IAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEY 124
Query: 593 EDQSSPEAKFAKDLDRYEMILQAFEYEKRENTPKKCQEFFTATEGK-FDHPFI 748
E S+PEAKF KD+D++EMI Q FEYE++ N K +F A GK HP +
Sbjct: 125 ESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQFTWA--GKLIQHPLV 175
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Frame = +2
Query: 680 ENTPKKCQEFFT-ATEGKFD----HPFIPD 754
E+ PK CQ F+T A EG +D H IPD
Sbjct: 20 EHAPKTCQNFYTLAKEGYYDGVIFHRVIPD 49
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +2
Query: 485 GVSPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQSSPEAKFAKDLDRYEMILQAF 664
G P E R+ ++SG + +Y++ +E +D+ + + LD +E + +A
Sbjct: 591 GFIPRELRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRAR 650
Query: 665 EYE 673
Y+
Sbjct: 651 GYK 653
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 497 EEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQ--SSPEAKFAKDLDRYEMILQAFEY 670
EE+ RRE E + + + R E K+ E+Q + K ++L+R + + +
Sbjct: 610 EERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQK 669
Query: 671 EKRENTPKKCQE 706
E+ + K+ QE
Sbjct: 670 EREKKLKKQQQE 681
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 584 KEYEDQSSPEAKFAKDLDRYEMILQAFEYEKRENTPKKCQEFFTATEG 727
K Y F K D M ++A EKRE+ KK +EF +T+G
Sbjct: 591 KRYSHTHQKNPNFVKLADA--MGIKALRVEKREDLAKKMKEFL-STKG 635
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 514 SSVFFFRTHSTVRCEVSNNALSQVVNESYLKTFYSVQFSRII 389
S F FR+ + + CE + S V + +++T +S++I
Sbjct: 71 SKTFAFRSSAKLNCEFRLSPFSTSVRQGHVQTVEEKSYSQMI 112
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/64 (25%), Positives = 23/64 (35%)
Frame = +2
Query: 464 GDLTPHCGVSPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQSSPEAKFAKDLDRY 643
G L EE+ EDE + + +E ED A KD+DR
Sbjct: 83 GSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMDRL 142
Query: 644 EMIL 655
+ I+
Sbjct: 143 KKII 146
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 320 NDCETIAGHMYRMGIMTFLLTEENNPTKLDRIKCLQIALIHDLAE 454
N A H+ +GI LLT++ +L + +Q++ + D +
Sbjct: 171 NAASWFASHLASLGIKIVLLTDDRENARLAAEQGIQVSTLKDYVQ 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,646
Number of Sequences: 5004
Number of extensions: 64995
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -