Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22c01
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0591 + 4384246-4384434,4384531-4384658,4384741-4384778,438... 144 5e-35
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 111 6e-25
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70... 30 1.7
07_01_0713 - 5438005-5438294,5438441-5438567,5438638-5438687,543... 29 3.0
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 29 4.0
07_01_0729 - 5560405-5561235 28 6.9
07_01_0366 + 2723069-2723116,2723239-2723488,2723563-2723715,272... 28 6.9
03_04_0032 - 16663018-16663026,16663072-16663235,16663384-166635... 28 6.9
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 28 9.2
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622 28 9.2
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 28 9.2
>02_01_0591 +
4384246-4384434,4384531-4384658,4384741-4384778,
4385248-4385358,4386266-4386345,4386910-4386946,
4387230-4387271,4387555-4387595,4387645-4387746
Length = 255
Score = 144 bits (350), Expect = 5e-35
Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Frame = +2
Query: 239 NSKILEFLELVGRLKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDRIK 418
++ ++FL L RLK KR GW+ + E++A HMYRMG+M L + P+ ++R +
Sbjct: 49 SASAIDFLTLCYRLKTTKRAGWVRRGVQGPESVADHMYRMGVMA--LVAADLPSGVNRDR 106
Query: 419 CLQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLT--GIAGDRMYELYKEY 592
C+++A++HD+AE IVGD+TP GV EEK RRE EA+ + L G + + EL+ EY
Sbjct: 107 CVKMAIVHDIAEAIVGDITPSDGVPKEEKSRREQEALDHMCSLLGGGPRAEEIRELWMEY 166
Query: 593 EDQSSPEAKFAKDLDRYEMILQAFEYEKRENTPKKCQEFFTATEGKF 733
E ++ EAK KD D+ EMILQA EYEK + +EFF +T GKF
Sbjct: 167 EQNATLEAKVVKDFDKVEMILQALEYEKEQGL--DLEEFFQSTAGKF 211
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 111 bits (267), Expect = 6e-25
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Frame = +2
Query: 242 SKILEFLELVGRLKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDRIKC 421
S ++FL L RLK KR GWI I E+IA HMYRM +M + + +DR +C
Sbjct: 81 SSAIDFLTLCHRLKTTKRKGWINHSIKGPESIADHMYRMALMALIA---GDLPAVDRERC 137
Query: 422 LQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLT--GIAGDRMYELYKEYE 595
++IA++HD+AE IVGD+TP G+ EK RRE +A+ + + G D + EL++EYE
Sbjct: 138 IKIAIVHDIAEAIVGDITPSDGIPKAEKSRREQKALNEMCEVLGGGPIADEIKELWEEYE 197
Query: 596 DQSSPEAKFAKDLDR 640
+ SS EA KD D+
Sbjct: 198 NNSSIEANLVKDFDK 212
Score = 34.7 bits (76), Expect = 0.080
Identities = 18/30 (60%), Positives = 19/30 (63%)
Frame = +2
Query: 644 EMILQAFEYEKRENTPKKCQEFFTATEGKF 733
EMILQA EYEK K EFF +T GKF
Sbjct: 397 EMILQALEYEKEHG--KVLDEFFLSTAGKF 424
>08_01_0098 -
700443-700660,701112-701268,701586-701678,701763-702149,
702755-702829,703486-703609,703693-703832,703904-703993,
704254-704298,704917-705042,705138-705272,705966-706451,
706539-706596,706728-706855,707209-707463
Length = 838
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 569 MYELYKEYEDQSSPEAKFAKDLDRYEMILQAFEYEKRENTPKKCQEFF 712
MY + K+YEDQ S A D D+ E L+ ++E+ P + Q +
Sbjct: 283 MYNVRKQYEDQLSNAD--ASDDDKLEEFLKYIKFEESSGDPARVQVLY 328
>07_01_0713 -
5438005-5438294,5438441-5438567,5438638-5438687,
5439119-5439426,5439581-5439673,5439840-5440197,
5440235-5440267,5440324-5440482,5440734-5440908
Length = 530
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +2
Query: 353 RMGIMTFLLTEENNPTKLDR---IKCL--QIALIH-DLAECIVGDLTPHCGVSPEEKHRR 514
R + F + +N P K I+CL Q +H D+ +C+ G L+ HC +S + R
Sbjct: 281 RSTMWEFAIKCDNRPYKRGNKPDIRCLLCQKLFLHADITQCMKGHLSKHCPMSTQSSLER 340
Query: 515 EDEAMK 532
A+K
Sbjct: 341 FHIALK 346
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 491 SPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQSSPEAK 619
SP ++ E+E + G +G DR+Y + K ++ ++P A+
Sbjct: 304 SPAARNGSEEEGSDSDGGRSGSGSDRVYTIDKVHQGATAPAAR 346
>07_01_0729 - 5560405-5561235
Length = 276
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 572 YELYKEYEDQSSPEAKFAKDLDRYEMILQAFEYEKRENTPKKCQEF-FTATEGKFD 736
YE+ E E++ E +F D + E Q E+E E ++ QE F A +G D
Sbjct: 69 YEVEFEVEEEEPYEVEFEVDEEEEEEDPQEVEFEVEEEEEEEPQEVEFAADDGSDD 124
>07_01_0366 +
2723069-2723116,2723239-2723488,2723563-2723715,
2723800-2723905,2723988-2724102,2724756-2724791
Length = 235
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 499 FRTHSTVRCEVSNNALSQVVNESY 428
F+TH T C + L+Q+V ++Y
Sbjct: 31 FKTHQTAGCPIKREELTQIVTKNY 54
>03_04_0032 -
16663018-16663026,16663072-16663235,16663384-16663517,
16664300-16664393,16667458-16667566,16668441-16668489,
16668622-16668647
Length = 194
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 593 RILCIIHTFYHQQFQLVLKLSSWPHLLFC 507
R+ + YH FQ++LKL HL C
Sbjct: 155 RLFRVYSHMYHSHFQMILKLKEEAHLSTC 183
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 490 HSTVRCEVSNNALSQVVNESYLKTFYSVQFSRII 389
+S R + SNN LS + NES T + + F +++
Sbjct: 391 NSLDRSDSSNNVLSSIANESTSPTQFILDFDKLV 424
>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
Length = 349
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 578 LYKEYEDQSSPEAKFAKDLDRYEMILQAFEYEKRENTPKKCQ 703
L +EY D+ +PE K ++ +M+ ++FE E + +K +
Sbjct: 74 LEEEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTE 115
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 203 WNTVHKTTLTMENSK--ILEFLELVGRLKHVKRTGW 304
WN + T EN++ +LE LE G LKH++ TG+
Sbjct: 135 WNDNMSSGPTEENTRYDVLEGLEPHGNLKHLQLTGY 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,335,540
Number of Sequences: 37544
Number of extensions: 353635
Number of successful extensions: 812
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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