Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22c01
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.44 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.44 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   7.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 272 LPIPKIPIFSNFPSLTLFYVQ 210
           LP P+ PI+SNFP     Y++
Sbjct: 305 LPFPQRPIWSNFPIYKYKYIR 325


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 272 LPIPKIPIFSNFPSLTLFYVQ 210
           LP P+ PI+SNFP     Y++
Sbjct: 305 LPFPQRPIWSNFPIYKYKYIR 325


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = +2

Query: 284 HVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNP 397
           +V +   I+C +N C ++   +    ++ F+  E+  P
Sbjct: 310 NVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKP 347


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/38 (21%), Positives = 19/38 (50%)
 Frame = +2

Query: 284 HVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNP 397
           +V +   I+C +N C ++   +    ++ F+  E+  P
Sbjct: 363 NVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKP 400


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 539 SGLTGIAGDRMYELYKEYEDQSSPEAKFAKDLDRYEMILQA 661
           +G  G  G R Y     YED +    +FA+++D   + ++A
Sbjct: 597 AGGAGGGGARSYVDPHTYEDPNQAVREFAREIDAGYITIEA 637


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 350 YRMGIMTFLLTEE 388
           YR+GI+ FL TE+
Sbjct: 158 YRLGILGFLSTED 170


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 350 YRMGIMTFLLTEE 388
           YR+GI+ FL TE+
Sbjct: 29  YRLGILGFLSTED 41


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 557 AGDRMYELYK-EYEDQSSPEAKFAKDLDRYEMILQAFEYEKRENTPK 694
           A D+  E +  EY+     +  F KD    +M+ +    EKR+N  K
Sbjct: 427 AADQKLEKHLIEYKKMLKIKRLFGKDRKIMDMVREKIIEEKRKNKNK 473


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 350 YRMGIMTFLLTEE 388
           YR+GI+ FL TE+
Sbjct: 158 YRLGILGFLSTED 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,984
Number of Sequences: 438
Number of extensions: 4713
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)