Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b23
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   2.8  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   2.8  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   3.7  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   6.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    24   8.6  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    24   8.6  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    24   8.6  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 111 SFGVTGLRVLSNKVSKD--GMYGMFVSTLCALASAVFGKRVFTEAGNVYKDETDSYQNAL 284
           +FGVT     S ++S D  G+    +ST   ++  +FG ++F EA + +   T  + N L
Sbjct: 134 TFGVT--LACSFELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKS-HSTHTKKHYNKL 190

Query: 285 RV 290
            +
Sbjct: 191 NL 192


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 53  NIWAILDYCH 82
           N+W I+DYCH
Sbjct: 83  NLWIIMDYCH 92


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 166 MPSLDTLLERTLNPVTPK 113
           M  + TLL RTLNP T K
Sbjct: 1   MDDIPTLLARTLNPTTSK 18


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 176 HAIHAIFGYLVGKD 135
           H  HA FGY++G+D
Sbjct: 670 HFFHADFGYILGRD 683


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 235 SVNTRLPNTALASAHRVDTNMPYMPSLDTLLERTLNPVTPKLLV 104
           SVN + PN++++       N   +P  +  +  T  P +P  L+
Sbjct: 145 SVNEKQPNSSISPTIESSMNKVNLPGAEEQVSATPLPASPNALL 188


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 183 TQTCHTCHLWIP 148
           T  CHTCHL+ P
Sbjct: 181 TVYCHTCHLYRP 192


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  NPVSVDQFNIWAILDYCHHAYWTDMHKK 112
           NP  V + ++  +LD+  HA   D+HK+
Sbjct: 65  NPKHVGKKHLKELLDFAAHAIPKDVHKE 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,749
Number of Sequences: 5004
Number of extensions: 29819
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)