Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b23
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    32   0.20 
Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical ...    27   7.4  

>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 247 TLPASVNTRLPNTALASAHRVDTNMPYMPSLDTLLERTLNPVTPKLLVHIGPI--GMMTV 74
           +LPA V +    +A A+AH V  N   +    ++ + T++P T KL  H+      +++ 
Sbjct: 446 SLPAPVVSAAAASASAAAHPVAMNGSAISGGSSMPDITMHPNTNKLFGHLKAFQSALLST 505

Query: 73  VKYRP 59
           VKY P
Sbjct: 506 VKYEP 510


>Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical
           protein F36H2.4 protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 189 LCALASAVFGKRVFTEAGNVYKDETDSYQNALRV 290
           LC + SA+FG++ FT   + Y+   + Y  AL +
Sbjct: 35  LCRVGSAIFGEQSFTNQMSTYQMIVEGYLIALLI 68


>Z80344-2|CAB02487.3|  608|Caenorhabditis elegans Hypothetical
           protein F15D4.4 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -3

Query: 247 TLPASVNTRLPNTALASAHRVDTNMPYMPSLDTLLERTLNPVTPKLLVHI 98
           T P S  T  P T   +   V T  PY+  L+   E   N    K L+ +
Sbjct: 92  TTPTSTQTTTPTTTTITTTPVPTTTPYLSPLEKFNEAMNNDGAFKSLMDV 141


>AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical
           protein T07D3.6 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 169 YMPSLDTLLERTLNPVTPKLLVHIGPIGMMTVVKYRPN 56
           Y PS   LL+R  NP + +L  H G + +  + K+  N
Sbjct: 270 YNPSYVELLQRPRNPSSFRLSRHFGMVVLREIWKWEEN 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,863,356
Number of Sequences: 27780
Number of extensions: 161794
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)