Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b22
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   2.2  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.2  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.9  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    27   3.9  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   5.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   6.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   8.9  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   8.9  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.9  

>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 229 HENGFCQLRVHN--LVNVHQLSGLFVHMTISNNRLGHVDFYRKNYTHFA 89
           HENG   L      +V+VH  SGLF + TI   R+  V  Y  ++T  A
Sbjct: 149 HENGVLSLPFSGSAVVDVHNSSGLFSNDTIPEERI--VLIYTDHWTGVA 195


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 317 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKS 433
           FD+   E  + + GFHD   YF  +   +  QN ++ KS
Sbjct: 17  FDEANDEAYESV-GFHDYADYFSRKQRKLQNQNAALYKS 54


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/78 (20%), Positives = 39/78 (50%)
 Frame = +2

Query: 305  VDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSI 484
            +D+Q  ++ R+Y      +  +++   +  Y V+  +G+ +      +  S   +D+K +
Sbjct: 877  IDDQLIEVARDYHPL---WATSVEILSERKYFVTEADGNAVILLRDNV--SPQLSDRKKL 931

Query: 485  ETYEKYCLPQLVDKHNDC 538
              Y+K+ L +L++K   C
Sbjct: 932  RWYKKFYLGELINKTRHC 949


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 623 CYQSGCTQKIA--LGCCRSQIPASTRIPPRSS 534
           C  S C  KIA  L  CR   P S+ +PP SS
Sbjct: 338 CAFSQCLSKIADWLRSCRLTKPESSSVPPSSS 369


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +2

Query: 527 HNDCYVAVCVLKPGFENGSNQVLSFEYNPIGNKVI--VPFAHEINDT--GLYEYDVLAYV 694
           H   + A+  +     + +N +      P  N +I  V      N+T  GL+++ + A+ 
Sbjct: 441 HRGNWAAIATMSLQLPSTANSISFLSSPPNNNDIIDKVICVSYANNTILGLFDFGLCAFT 500

Query: 695 DSVEFDGKQFEEFVQKLI 748
             +EF  ++ +  +Q+L+
Sbjct: 501 QEIEFSNEKEKSPIQQLL 518


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 554 VLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVLAYVDSVEFD 712
           VL P F+NG+N     + N + N V +  A +     LY+    A  D + ++
Sbjct: 155 VLHPQFQNGTNAPYVVQSNLMQNNVNLTGAEQEKGLDLYKNSATANNDEIFYN 207


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +2

Query: 362 HDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKY 502
           H N    K  + S SC+   V  SK + I    D  DKK  +    Y
Sbjct: 76  HGNSGSQKTHNVSFSCEIRKVKSSKLSPISNMEDSEDKKEEDESSSY 122


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 275 NDLRDRIKSK-VDEQFDQLEREYSDKIDGFHDNIQYFKD 388
           ND R  ++S  + E+  Q+   +SDK     DNI  F++
Sbjct: 660 NDTRCEVRSSSILEELGQVTHVFSDKTGTLTDNIMLFRN 698


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 290 RIKSKVDEQFDQLEREYSDKIDGFHDNI 373
           R + K D  ++ LEREY    D F +++
Sbjct: 285 RAQLKKDPNYESLEREYQKACDDFENSL 312


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +2

Query: 296 KSKVDE-QFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTD 472
           ++K+++ +F + E+   +KI+G    I   + E  S+  Q  SVL ++  + L+      
Sbjct: 738 EAKIEQAKFKRDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISET 797

Query: 473 KKSIETY 493
           +K +E+Y
Sbjct: 798 EKELESY 804


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 476 KSIETYEKYCLPQLVDKHNDCYVAVCVLKPGFENGSN 586
           K I+ +    L + +  HNDC  ++C +  GF + SN
Sbjct: 158 KLIKIWNGEKLVKSILAHNDCVRSLCQIPGGFASCSN 194


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = -2

Query: 259 ASY--RTRNVKHHENGF 215
           ASY  +T NVKHHEN F
Sbjct: 30  ASYCPQTINVKHHENSF 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,009
Number of Sequences: 5004
Number of extensions: 63640
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)