Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b18
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    46   9e-07
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   2.5  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    25   2.5  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    25   3.3  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    25   3.3  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    24   4.4  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    24   4.4  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    24   5.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    24   5.8  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    23   7.7  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    23   7.7  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    23   7.7  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    23   7.7  

>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 46.4 bits (105), Expect = 9e-07
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 103 DDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDCINK 243
           + D  +  L+K GC+E H ++ +C  +T DWRKC   +  FR C  K
Sbjct: 14  EKDVWDTALEKGGCVEEHLRLNDCYWDTHDWRKCTEQMEEFRKCWEK 60


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 89  NRSAVMMIPWKAC*KKLAVWNYTIK 163
           N  A+  I WK   K +  WNY  K
Sbjct: 169 NSDAIKSIAWKEKDKSIKTWNYQPK 193


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 146 WNYTIKCRNASPKRKTGE--SVKPQLIISEIVSTNINRKKQLK 268
           WN+ I C N   K++ G+   +  +  I  I+  N N +   K
Sbjct: 25  WNHDITCLNFKVKKRRGDFYVINERFFIKYIIKKNKNPQNLTK 67


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 199 FSSLSFRRCIPALYSVVPDSQFFSACLPRD 110
           FS+  F + I   Y V P+S+FF+    RD
Sbjct: 214 FSTWFFWQLIKGRYEVAPESKFFNYVDVRD 243


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 137 LAVW---NYTIKCRNASPKRKTGESVKPQLIISEIVS 238
           + VW   NY  +C N +   K  ES++P+  I   V+
Sbjct: 252 VTVWSAPNYCYRCGNVASVMKVDESLEPEFRIFSAVA 288


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 89  NRSAVMMIPWKAC*KKLAVWNYTI-KCRNASPKRKTGESVKPQLIISEIVSTNINRKKQL 265
           N+S    +P K   ++     + + +C+++SPKR +   VK  + I    S    +K  L
Sbjct: 185 NKSVEFPMPLKERQRRRIALQWILGECKSSSPKRLSDRIVKEIIAIRSKTSNCFKKKDHL 244


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 142 CLELHYKVQECIAETKDWRKCQTAV 216
           C EL   VQE + ++K++ +C T V
Sbjct: 177 CRELTITVQEALEKSKEFIRCWTNV 201


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 73  TIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRD 231
           T+K   Q  S +D  E   ++  C E+   V++     KD  K  T+ NN  +
Sbjct: 245 TLKSSGQYVSKEDITELFAEQVKCSEIAQVVRDEQDTAKDPVKALTSTNNVEE 297


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 146 WNYTIKCRNASPKRKTGESVKP 211
           WNY I+C+   P RKT   + P
Sbjct: 750 WNYLIQCK--KPARKTPLLIPP 769


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 197 ESVKPQLIISEIVSTNINRKKQLKINIKS 283
           E  KP+ +  + + TNI + ++ KINIK+
Sbjct: 15  ELCKPEKVNKQNLFTNIIKPQKDKINIKT 43


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 197 ESVKPQLIISEIVSTNINRKKQLKINIKS 283
           E  KP+ +  + + TNI + ++ KINIK+
Sbjct: 35  ELCKPEKVNKQNLFTNIIKPQKDKINIKT 63


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 197 ESVKPQLIISEIVSTNINRKKQLKINIKS 283
           E  KP+ +  + + TNI + ++ KINIK+
Sbjct: 15  ELCKPEKVNKQNLFTNIVKPQKDKINIKT 43


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 197 ESVKPQLIISEIVSTNINRKKQLKINIKS 283
           E  KP+ +  + + TNI + ++ KINIK+
Sbjct: 15  ELCKPEKVNKQNLFTNIIKPQKDKINIKT 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,137
Number of Sequences: 5004
Number of extensions: 23138
Number of successful extensions: 71
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)