Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22b18
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 35 0.014
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 29 0.55
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526... 29 0.55
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 28 1.3
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088... 27 2.2
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587... 27 2.9
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265... 27 2.9
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696... 27 3.8
07_03_0843 - 21962223-21963815,21963957-21964607 26 6.7
08_02_0624 - 19434168-19435352 25 8.9
07_03_0095 + 13346588-13346802,13346844-13346994,13348631-133488... 25 8.9
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 25 8.9
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 KKTGCLELHYKVQECIAETK-DWRKCQTAVNNFRDCINKHKQ 252
K C + + V +C+ TK D++KC+T ++ + +C N K+
Sbjct: 69 KDDPCCDTYSLVMKCLENTKNDFKKCKTLIDKYEECSNPPKE 110
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 29.5 bits (63), Expect = 0.55
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 136 TGCLELHYKVQEC-IAETKDWRKCQTAVNNFRDCINKHKQEETTK 267
T C E ++C ++ +D KC AV F C+ +Q TK
Sbjct: 525 TPCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACVRLARQRGNTK 569
>02_05_0389 +
28551649-28551903,28552328-28552402,28552482-28552605,
28552692-28552978,28553147-28553482,28553813-28553869,
28554156-28554382,28554465-28554627,28554912-28554938
Length = 516
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +1
Query: 25 PKKLILPLKRIS-YKNMTIKPREQIGSDDD------PVEGMLKKTGCLELHYKVQECIAE 183
P++ I LK ++ +M + PR Q+ S + P E +LK+ ++ +QE + +
Sbjct: 351 PEEKIRILKGLTRMSSMRVGPRPQVVSPERQKLYSIPEEQLLKEKREIDELINIQEALRD 410
Query: 184 TKDWRKCQTAVNNFRDC 234
+K +C+ A++ C
Sbjct: 411 SKQCPRCKMAISKIEGC 427
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 181 RRCIPALYSVVPDSQFFSA 125
+RCIP LYS+VP F A
Sbjct: 436 KRCIPRLYSIVPMEHAFKA 454
>02_04_0278 -
21507288-21507726,21507893-21507972,21508587-21508840,
21508988-21509180
Length = 321
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 140 PVFFSMPSTGSSSLPICSRGFIV 72
P+F S TGS++ +C+RGF V
Sbjct: 56 PLFVSSAETGSANSEMCTRGFDV 78
>02_05_0390 +
28557722-28557937,28558440-28558514,28558597-28558766,
28559046-28559124,28559320-28559516,28560300-28560387,
28560453-28560679,28560763-28560919,28561467-28561517
Length = 419
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 112 PVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDC 234
P E +LK+ LE +QE + +K C+ A++ C
Sbjct: 284 PAEQLLKERRELEELMNIQEALRSSKQCPHCKMAISKIEGC 324
>02_03_0056 -
14525491-14525833,14525882-14526125,14526447-14526591,
14526757-14527121,14527323-14527722
Length = 498
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 148 ELHYKVQECIAETKDWRKCQTAVNNFRDCINKHKQE 255
E+HY + E IA+T++W+ Q A F + N +Q+
Sbjct: 446 EIHYNLTEHIAQTQEWQ--QPANAQFANINNMMQQQ 479
>01_06_0357 -
28668894-28669238,28669510-28669537,28669578-28669635,
28669836-28669916,28670395-28670526,28670609-28670926,
28672495-28673317
Length = 594
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 136 FFSACLPRDHHHCRSVLEV 80
FFS+C DHH+ + +EV
Sbjct: 292 FFSSCSSEDHHNSQGAVEV 310
>07_03_0843 - 21962223-21963815,21963957-21964607
Length = 747
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 43 PLKRISYKNMTIKP 84
PL+R+SY NMTI P
Sbjct: 517 PLQRVSYLNMTIYP 530
>08_02_0624 - 19434168-19435352
Length = 394
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = -1
Query: 175 CIPALYSVVPDSQFFSACLPRDHHHCRSVLEVL*SYFCRKYVLVAIL 35
C AL+ + + + D HHC + E+ Y VL A++
Sbjct: 316 CEDALWETIDVANAAATLRLADRHHCPQLKELCMEYIASAGVLAAVM 362
>07_03_0095 +
13346588-13346802,13346844-13346994,13348631-13348873,
13348942-13348986
Length = 217
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 161 KCRNASPKRKTGESVKPQ--LIISEIVSTNINRKKQLKI 271
+C S R ES+KP+ + S I I+ KK+L++
Sbjct: 87 ECSETSSDRSNSESIKPEECAMPSSIFDKKISIKKKLRL 125
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 169 ECIAETKDWRKCQTAVNNFRDCINKHK 249
E I KD + C+T V + + CINK +
Sbjct: 128 EYIFGHKDQQTCKTWVEHIKTCINKEQ 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,313,751
Number of Sequences: 37544
Number of extensions: 132867
Number of successful extensions: 343
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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