Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22b18
(307 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical pr... 30 0.37
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 28 1.1
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 27 2.0
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 27 2.0
U53341-3|AAM69115.1| 608|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z79754-6|CAB02095.1| 368|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z35640-5|CAO82046.1| 689|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z35640-4|CAA84704.1| 707|Caenorhabditis elegans Hypothetical pr... 26 6.0
U39852-3|ABN43083.1| 211|Caenorhabditis elegans Hypothetical pr... 26 6.0
CU457737-8|CAM36329.1| 811|Caenorhabditis elegans Hypothetical ... 26 6.0
AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical ... 26 6.0
Z81593-7|CAB63316.2| 400|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical pr... 25 7.9
>Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical
protein T15H9.5 protein.
Length = 173
Score = 29.9 bits (64), Expect = 0.37
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = +1
Query: 7 CCAIV*PKKLILPLKRISYKNMTIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAET 186
C V P+K P+K +S K + K +E+ D+ VE +KK E+ E + +
Sbjct: 61 CKKPVSPEKKKSPIKVLSEKKLKSKKKEEDKEPDEKVEKDVKK----EVKADNNEPLVKN 116
Query: 187 KDWRKCQTAVNNFRDCINKHKQEETTKNK 273
K + N + + HK E K K
Sbjct: 117 LKIAKKEQEEENPKTDLESHKDEAEAKKK 145
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 100 SDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKC---QTAVNNFRDCINKHKQEETTKN 270
+D + E + K +E +K +TK +C +T +NN + + + +EE KN
Sbjct: 65 TDSNAAENLDNKENIIESTFKTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKEKN 124
Query: 271 K 273
K
Sbjct: 125 K 125
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 157 YKVQECIAETK-DWRKCQTAVNNFRDCI 237
Y+ Q+ IAE K ++CQ A +N+RD I
Sbjct: 1069 YEKQKKIAEAKLSTKECQNAESNYRDAI 1096
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 157 YKVQECIAETK-DWRKCQTAVNNFRDCI 237
Y+ Q+ IAE K ++CQ A +N+RD I
Sbjct: 1055 YEKQKKIAEAKLSTKECQNAESNYRDAI 1082
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 157 YKVQECIAETK-DWRKCQTAVNNFRDCI 237
Y+ Q+ IAE K ++CQ A +N+RD I
Sbjct: 1055 YEKQKKIAEAKLSTKECQNAESNYRDAI 1082
>U53341-3|AAM69115.1| 608|Caenorhabditis elegans Hypothetical
protein F49E10.4b protein.
Length = 608
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +1
Query: 142 CLELHYKVQECIAETKDWRKC---QTAVNNFR 228
CL +H +Q+CI+ + D + C +T++ NFR
Sbjct: 525 CLTIHQYIQKCISISWDIQCCPERKTSLKNFR 556
>Z79754-6|CAB02095.1| 368|Caenorhabditis elegans Hypothetical
protein F25H2.7 protein.
Length = 368
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 82 PREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWR 198
P+ GSD+ + ++ + G LEL K+ C E W+
Sbjct: 197 PKSFHGSDNGAIHSVILRQGPLELKNKIDSC--ENNFWK 233
>Z35640-5|CAO82046.1| 689|Caenorhabditis elegans Hypothetical
protein F43D9.3b protein.
Length = 689
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/61 (18%), Positives = 28/61 (45%)
Frame = +1
Query: 67 NMTIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDCINKH 246
N+ ++GS + +L+ ++LH + + + RK ++++ + C N H
Sbjct: 389 NVLADTTAKLGSTVMSLPDLLESKRLIDLHTNIATTLLDVIKERKLDVSLSSSKSCCNTH 448
Query: 247 K 249
+
Sbjct: 449 R 449
>Z35640-4|CAA84704.1| 707|Caenorhabditis elegans Hypothetical
protein F43D9.3a protein.
Length = 707
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/61 (18%), Positives = 28/61 (45%)
Frame = +1
Query: 67 NMTIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVNNFRDCINKH 246
N+ ++GS + +L+ ++LH + + + RK ++++ + C N H
Sbjct: 389 NVLADTTAKLGSTVMSLPDLLESKRLIDLHTNIATTLLDVIKERKLDVSLSSSKSCCNTH 448
Query: 247 K 249
+
Sbjct: 449 R 449
>U39852-3|ABN43083.1| 211|Caenorhabditis elegans Hypothetical
protein K10C2.8 protein.
Length = 211
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +1
Query: 40 LPLKRISYKNMTIKPREQIGSDDDPVEGMLKKTGCLELHYKVQECIAETKDWRKCQTAVN 219
L LK I+ +M I Q SD + + +GCL HY + + K+
Sbjct: 103 LRLKHIAEASMFISKSIQHSSDCTMKGNVFQYSGCLSKHYDLNQ-NNTLKELESLHEHRY 161
Query: 220 NFRDCINKH 246
+ C++KH
Sbjct: 162 DVVSCVDKH 170
>CU457737-8|CAM36329.1| 811|Caenorhabditis elegans Hypothetical
protein C52D10.12 protein.
Length = 811
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 234 TISEIINCGLTLSPVFRFGD 175
T+ EI+ G T PV+++GD
Sbjct: 413 TVMEIVKMGYTRIPVYQYGD 432
>AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical
protein B0205.9 protein.
Length = 532
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 148 PDSQFFSACLPRDHHHCRSVLEVL*SYFCRKYVLVAI 38
PD +S C + HH ++ L +Y R+ V V +
Sbjct: 39 PDRSTYSMCYDKFHHRLAPIMNELNTYSIRERVRVML 75
>Z81593-7|CAB63316.2| 400|Caenorhabditis elegans Hypothetical
protein T20B3.13 protein.
Length = 400
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 122 PSTGSSSLPICSRGFIVI 69
P+T S +PIC+ F++I
Sbjct: 131 PTTSSEKVPICTNNFVLI 148
>Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical
protein C50B6.6 protein.
Length = 367
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 144 TASFFQHAFHGIIITADLFSRFYSHIFV 61
T+ F Q HG+++ A L Y+ +FV
Sbjct: 255 TSLFIQAVIHGVMLGAPLIGFIYAVVFV 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,808,829
Number of Sequences: 27780
Number of extensions: 134385
Number of successful extensions: 438
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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