Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc22b16
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    27   2.8  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    26   5.0  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   6.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.7  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 35  GKKLSSCITSRTVRGRQYGVSVSAL*SLTYPSSHTHRIEALL 160
           G K+ SC+     RG+  G  V  + S ++  S  H ++ LL
Sbjct: 335 GIKIQSCLVGGFRRGKPVGADVDMVLSPSHTHSTKHLVDVLL 376


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 126 GYVSDYNADTETPYCRPRTVRDVMHDES 43
           G ++ +  + E PY RP+  + ++HD S
Sbjct: 183 GKITIFTREDEVPYDRPKLSKSLLHDIS 210


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 168 RYGREARSPRARCNLRTC*AA*QVRAVSNCTKERNQFQFRPT 293
           RYGR   SP +R + +       +R+ S   KER + ++RPT
Sbjct: 205 RYGRSP-SPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPT 245


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = -1

Query: 438  QLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNPNT 304
            Q FD+   + ++ D+ ++ + L  A +    ++DR+ + + NP++
Sbjct: 4305 QAFDDSEFMHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDS 4349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,094
Number of Sequences: 5004
Number of extensions: 60099
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)