Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc22b16
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 30 1.5
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 30 1.5
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 30 1.5
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 1.5
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 4.6
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 29 4.6
Z67755-6|CAA91759.1| 311|Caenorhabditis elegans Hypothetical pr... 28 6.1
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 28 8.1
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 189 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 76
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 189 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 76
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 189 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 76
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 189 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 76
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 189 CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRP 76
C PHG+ +I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 396 DGQEQ-EKLIRAGEAYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 250
+G+E E+ + AG+ YC +D R C G W L ET + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 198 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 109
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 198 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 109
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 198 PVGCAPHGRIDDINSASIRCVCDDGYVSDY 109
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z67755-6|CAA91759.1| 311|Caenorhabditis elegans Hypothetical
protein F54F7.6 protein.
Length = 311
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 617 SIKFTYVYTIAIITRRNNSIIAKCILLIGECPSIFVRTRYFVV 745
++ FT + T ++ R N++ +CI+ + E P F + FVV
Sbjct: 48 TVVFTQLNTTNVVERLGNNLF-RCIVKVNELPRNFQHSHNFVV 89
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 96 ETPYCRPRTVRDVMHDESFFPRAPCADGQVR 4
E + P + + H + +FPR C DG VR
Sbjct: 73 ENLFSPPHCLNHLHHAKCYFPRCVCNDGYVR 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,967,895
Number of Sequences: 27780
Number of extensions: 367110
Number of successful extensions: 1144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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